Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C2E19_RS03160 Genome accession   NZ_CP027218
Coordinates   705770..706834 (+) Length   354 a.a.
NCBI ID   WP_129387968.1    Uniprot ID   A0A481QQ54
Organism   Pseudomonas sp. DTU12.3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 700770..711834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2E19_RS03150 (C2E19_03155) - 701523..702791 (+) 1269 WP_129387962.1 malic enzyme-like NAD(P)-binding protein -
  C2E19_RS03155 (C2E19_03160) - 703106..705553 (-) 2448 WP_129387965.1 penicillin-binding protein 1A -
  C2E19_RS03160 (C2E19_03165) comM 705770..706834 (+) 1065 WP_129387968.1 pilus assembly protein PilM Machinery gene
  C2E19_RS03165 (C2E19_03170) - 706834..707400 (+) 567 WP_129387971.1 PilN domain-containing protein -
  C2E19_RS03170 (C2E19_03175) pilO 707397..708020 (+) 624 WP_129387974.1 type 4a pilus biogenesis protein PilO -
  C2E19_RS03175 (C2E19_03180) - 708017..708544 (+) 528 WP_129387977.1 pilus assembly protein PilP -
  C2E19_RS03180 (C2E19_03185) pilQ 708558..710639 (+) 2082 WP_129387979.1 type IV pilus secretin PilQ family protein Machinery gene
  C2E19_RS03185 (C2E19_03190) aroK 710644..711162 (+) 519 WP_129387982.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38156.73 Da        Isoelectric Point: 4.7461

>NTDB_id=275788 C2E19_RS03160 WP_129387968.1 705770..706834(+) (comM) [Pseudomonas sp. DTU12.3]
MLGLFNKKTNTLLGIDISSTSVKLLELSRQGDRYRVEAYAVEPLPANAVVEKNIAELEGVGQALTRVLVKARTGLRSVAV
AVAGSAVITKIIEMDAGLSDDELENQLKIEADQYIPYPLDEVAIDFEVQGMSPRNPERVSVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLATQLAASQERLTVAVVDIGATMTTLSVLHNGKIIYTREQLFGGRQLTEEIQRRYGLTV
EQAGLAKKQGGLPEDYVSEVLQPFREALVQQVSRSLQFFFASGQYNAVDHILLAGGTASVPGLDRLIEQRLNTPTQVANP
FADMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=275788 C2E19_RS03160 WP_129387968.1 705770..706834(+) (comM) [Pseudomonas sp. DTU12.3]
GTGCTGGGACTCTTCAATAAAAAGACCAATACGTTACTGGGGATCGACATCAGCTCCACGTCAGTGAAGCTGCTGGAACT
GAGCCGTCAGGGTGATCGCTACCGCGTCGAGGCCTACGCGGTAGAGCCTTTGCCGGCGAATGCCGTGGTCGAAAAAAACA
TCGCCGAACTCGAAGGCGTCGGTCAGGCCCTGACCCGCGTGCTGGTCAAGGCGCGCACCGGGCTCAGGAGCGTGGCGGTG
GCGGTGGCCGGTTCTGCGGTGATCACCAAGATCATCGAAATGGACGCCGGACTTTCCGACGACGAGCTGGAAAACCAGCT
GAAGATCGAAGCTGACCAGTACATTCCCTATCCGCTCGACGAGGTCGCGATCGACTTCGAAGTCCAGGGCATGTCGCCGC
GCAACCCGGAACGGGTCAGCGTGTTGCTGGCCGCCTGTCGCAAGGAAAACGTCGAAGTCCGCGAAGCGGCGCTCGCCCTC
GCCGGCCTGACTGCGCGAGTGGTCGATGTCGAGGCCTATGCGCTGGAGCGCTCGTTCGGTCTGCTCGCCACACAACTGGC
CGCCTCGCAAGAGCGCTTAACCGTGGCGGTGGTCGACATCGGCGCGACCATGACCACCCTCAGCGTCCTGCACAACGGCA
AGATCATCTACACCCGCGAGCAACTGTTCGGCGGTCGGCAACTGACCGAGGAAATCCAGCGGCGTTATGGCCTGACCGTC
GAGCAGGCCGGGCTGGCAAAAAAGCAGGGTGGCTTGCCCGAGGATTACGTCAGCGAGGTCTTGCAGCCGTTTCGCGAGGC
GCTGGTGCAGCAGGTATCCCGTTCACTGCAGTTCTTCTTCGCTTCCGGCCAGTACAACGCGGTCGATCACATTTTGCTGG
CCGGTGGCACGGCGTCGGTGCCGGGGCTCGATCGGTTGATCGAACAGCGCCTGAACACCCCGACCCAAGTGGCTAATCCG
TTTGCCGACATGGCCCTGAGCAGCAAGGTCAACGCCGGGGCACTGGCCAGCGATGCGCCAGCCCTGATGATTGCCTGCGG
GCTCGCGCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A481QQ54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

55.932

100

0.559
  pilM Acinetobacter baumannii D1279779

55.932

100

0.559
  comM Acinetobacter nosocomialis M2

55.932

100

0.559
  pilM Legionella pneumophila strain ERS1305867

47.175

100

0.472

Multiple sequence alignment