Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C5Z25_RS00875 Genome accession   NZ_CP027190
Coordinates   183914..184786 (-) Length   290 a.a.
NCBI ID   WP_105450829.1    Uniprot ID   A0A2R3JLC9
Organism   Lactobacillus sp. CBA3605     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 178914..189786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Z25_RS00865 (C5Z25_00865) - 180022..181560 (+) 1539 WP_105450825.1 gluconokinase -
  C5Z25_RS00870 (C5Z25_00870) topA 181666..183825 (-) 2160 WP_105450826.1 type I DNA topoisomerase -
  C5Z25_RS00875 (C5Z25_00875) dprA 183914..184786 (-) 873 WP_105450829.1 DNA-processing protein DprA Machinery gene
  C5Z25_RS00880 (C5Z25_00880) - 184823..185590 (-) 768 WP_234002761.1 ribonuclease HII -
  C5Z25_RS00885 (C5Z25_00885) ylqF 185583..186437 (-) 855 WP_105450833.1 ribosome biogenesis GTPase YlqF -
  C5Z25_RS00890 (C5Z25_00890) - 186591..188090 (-) 1500 WP_105450835.1 S41 family peptidase -
  C5Z25_RS00895 (C5Z25_00895) - 188121..188342 (-) 222 WP_105448462.1 YozE family protein -
  C5Z25_RS00900 (C5Z25_00900) - 188355..188996 (-) 642 WP_105450836.1 YpmS family protein -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 30914.16 Da        Isoelectric Point: 10.3556

>NTDB_id=275639 C5Z25_RS00875 WP_105450829.1 183914..184786(-) (dprA) [Lactobacillus sp. CBA3605]
MQLRSLLIRLHLAQGIGYQGIVRVLQHCRQTATVLTTVSAIATIAQLSTAAAQKFKIDWASDRFQHVLRQHETVTILTIL
DADYPASLLASYQPPLVLFLQGQRQLLATTQLAVVGARQASPYAQRVLNRLLPPLVGAALPLTVISGLAAGTDGLAHQTA
LRVGLKTIAVIGTGLDISYPRQNAAIQRQVGQVGLLISEYPLGSPPARHHFPARNRIIAGLCQSLVVIEARAHSGSLITA
NLALQANRNVLAVPGPIDAPMSVGCNELILAGAKPVLNSGHIIEEFLPII

Nucleotide


Download         Length: 873 bp        

>NTDB_id=275639 C5Z25_RS00875 WP_105450829.1 183914..184786(-) (dprA) [Lactobacillus sp. CBA3605]
ATGCAATTACGAAGTTTACTGATTCGACTGCATTTGGCACAAGGCATTGGTTATCAGGGAATTGTGCGAGTCTTACAACA
CTGTCGACAGACAGCAACCGTCTTAACAACGGTGTCAGCCATTGCGACTATCGCTCAGCTTTCAACAGCTGCAGCGCAAA
AATTCAAAATAGATTGGGCTAGTGACCGGTTTCAACACGTCCTACGGCAACATGAAACGGTGACAATTTTAACAATCCTG
GATGCTGATTATCCCGCGTCGCTATTAGCGAGCTATCAGCCCCCGTTAGTCTTGTTTTTACAGGGGCAGCGCCAACTATT
AGCAACGACCCAGTTAGCGGTGGTCGGAGCCCGGCAAGCGAGTCCATATGCGCAACGGGTTCTCAACCGATTGTTGCCGC
CATTAGTTGGGGCAGCGTTACCTTTAACGGTGATCAGTGGGTTAGCTGCTGGTACGGATGGTTTAGCACATCAAACGGCT
TTACGGGTTGGCTTGAAGACAATTGCGGTTATTGGTACCGGGTTAGATATCAGTTATCCACGTCAAAATGCCGCCATACA
ACGACAAGTTGGTCAGGTCGGTTTACTAATTAGTGAATATCCGCTAGGCAGCCCACCGGCGCGCCATCATTTTCCAGCCC
GTAATCGCATTATTGCAGGACTTTGTCAGTCGTTAGTTGTGATTGAAGCACGGGCGCATTCTGGGAGTTTAATTACGGCT
AATCTAGCGTTACAAGCGAATCGAAATGTATTGGCAGTTCCTGGGCCAATTGATGCCCCCATGTCGGTCGGTTGTAATGA
ATTGATCTTAGCCGGTGCGAAACCAGTCTTAAATTCGGGGCATATAATAGAAGAGTTTTTACCGATAATTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3JLC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

50

97.241

0.486
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

37.5

99.31

0.372
  dprA/cilB/dalA Streptococcus pneumoniae D39

37.5

99.31

0.372
  dprA/cilB/dalA Streptococcus pneumoniae R6

37.5

99.31

0.372
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

37.5

99.31

0.372
  dprA/cilB/dalA Streptococcus mitis SK321

37.153

99.31

0.369
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

37.153

99.31

0.369

Multiple sequence alignment