Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SSA_RS10600 Genome accession   NC_009009
Coordinates   2161874..2163847 (+) Length   657 a.a.
NCBI ID   WP_011837589.1    Uniprot ID   -
Organism   Streptococcus sanguinis SK36     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2156874..2168847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS10570 (SSA_2157) radA 2157138..2158505 (-) 1368 WP_125337611.1 DNA repair protein RadA Machinery gene
  SSA_RS10575 (SSA_2158) - 2158511..2159143 (-) 633 WP_011837584.1 methyltransferase domain-containing protein -
  SSA_RS10580 (SSA_2159) - 2159196..2159711 (-) 516 WP_011837585.1 histidine phosphatase family protein -
  SSA_RS10585 (SSA_2160) - 2159713..2160156 (-) 444 WP_011837586.1 dUTP diphosphatase -
  SSA_RS10590 (SSA_2161) - 2160241..2160690 (-) 450 WP_011837587.1 8-oxo-dGTP diphosphatase -
  SSA_RS10595 (SSA_2164) - 2160956..2161645 (-) 690 WP_002893948.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  SSA_RS10600 (SSA_2165) amiA 2161874..2163847 (+) 1974 WP_011837589.1 peptide ABC transporter substrate-binding protein Regulator
  SSA_RS11930 rcrQ 2163963..2164751 (-) 789 WP_398578198.1 ABC transporter ATP-binding protein Regulator
  SSA_RS11935 - 2164887..2165618 (-) 732 Protein_2058 ABC transporter ATP-binding protein -
  SSA_RS11940 - 2165594..2165732 (-) 139 Protein_2059 ABC transporter ATP-binding protein -
  SSA_RS10610 (SSA_2167) - 2165734..2167440 (-) 1707 WP_033179225.1 ABC transporter ATP-binding protein -
  SSA_RS10615 (SSA_2168) - 2167601..2168623 (+) 1023 WP_002899188.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 72347.28 Da        Isoelectric Point: 4.6695

>NTDB_id=27549 SSA_RS10600 WP_011837589.1 2161874..2163847(+) (amiA) [Streptococcus sanguinis SK36]
MRKSNILLAAGLTLLSVGLLTACSGGGSSQSSKKIYSYVFTSDPTTLDYIQSAKVSTHELTTNGVDGLLENDKYGNLAPS
IAEDWTVSPDGLVYTYKLRKDAKWYTADGEEYADVTAQDFVAGIKHAADVKSDALPLIQDSIKGLSEYAAGTNKDFSAVG
VKALDDHTVQYTLNKPETYWNSKTTSGVMMPVNEAFLEKQGKEFGQATKADSILYNGPFIMKSITSKSSVEFEKNPNYWD
KDKVKIDGVKLSYYDGSDQDSLARTFGDGGYSLARLYPATSSYSSIAEKYKDNIFMTEAGAGVGLISFNIDRQSYNHTSK
TSDEQKEATKKALLNKDFRQALAFALNRESYSAQVNGEDAAKPAVRNLFVPPTFVQANGKEFGTLVEESLASYGDEWKGI
KLDDGQDGLHNTDKAKAEFAKAKQALANEGVQFPIHLDVPVTQNSTNFVNRMQSLKQSLEEALGKDNVSVDLQMLAEDEA
LNITFNAEAASQEDWDINGLVGWEPDYQDPSTYLDILVPGNSTQTRTYLGFEDKDNAAAKAVGLDEYSKLIEEAGNETQD
VDKRYEKYAAAQAWLTDSALVVPTMSSRGAAPFISRIVPFTNSYAQTGTKDANYHKYVEISDEIVTTKDYQKAQEKWKKE
KEESNKKAQEDLAKHVK

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=27549 SSA_RS10600 WP_011837589.1 2161874..2163847(+) (amiA) [Streptococcus sanguinis SK36]
ATGAGAAAATCAAATATTCTTCTTGCCGCAGGGCTCACTCTGCTCTCTGTCGGCTTACTTACAGCTTGCTCTGGAGGCGG
AAGTTCCCAATCCAGCAAAAAAATCTACAGCTATGTCTTTACGTCTGATCCAACGACTTTGGACTACATCCAGTCAGCAA
AGGTGTCTACCCACGAGCTGACTACAAATGGTGTAGACGGCTTGCTGGAAAATGATAAATATGGAAACTTAGCTCCGTCT
ATCGCAGAAGATTGGACAGTCTCTCCAGATGGTCTCGTCTATACCTATAAGCTGCGCAAAGATGCCAAGTGGTATACCGC
TGATGGCGAAGAATACGCAGATGTCACGGCTCAGGACTTTGTGGCAGGTATCAAACATGCTGCTGATGTCAAATCAGATG
CCCTCCCTCTTATCCAAGATTCCATCAAGGGACTGAGTGAATATGCAGCTGGTACCAACAAGGACTTTTCAGCTGTTGGA
GTTAAGGCACTGGACGATCATACGGTTCAATATACACTCAACAAGCCTGAAACCTACTGGAACTCTAAAACAACATCAGG
TGTTATGATGCCGGTCAACGAGGCCTTTCTAGAAAAGCAAGGCAAGGAATTCGGTCAGGCAACCAAAGCCGACTCCATTC
TGTATAACGGTCCATTTATCATGAAATCCATTACTTCTAAATCCTCTGTCGAATTTGAGAAGAACCCTAACTACTGGGAT
AAGGACAAGGTCAAGATTGATGGTGTCAAACTGTCTTACTACGATGGTTCTGACCAAGATTCATTAGCGCGGACCTTCGG
AGATGGCGGCTACAGTTTGGCAAGACTCTACCCAGCAACTTCCAGTTATTCCTCAATCGCTGAGAAATACAAAGATAATA
TCTTCATGACAGAAGCAGGAGCGGGGGTCGGTCTAATCAGCTTTAACATTGACCGTCAAAGTTATAACCATACTTCTAAA
ACCAGCGATGAACAAAAAGAAGCTACCAAAAAAGCTCTGCTGAACAAAGACTTCCGCCAAGCTCTAGCCTTTGCCCTTAA
CCGCGAAAGCTATTCGGCTCAGGTCAACGGAGAAGATGCAGCCAAGCCAGCTGTCCGTAATCTCTTTGTTCCGCCAACCT
TCGTACAAGCCAATGGCAAGGAATTTGGCACTCTTGTCGAAGAATCACTGGCTTCCTATGGTGACGAGTGGAAAGGTATC
AAGCTAGATGACGGTCAAGACGGTCTCCACAATACTGACAAAGCCAAGGCGGAATTTGCCAAAGCCAAGCAGGCTCTTGC
AAATGAAGGCGTACAATTCCCAATTCACCTAGATGTTCCTGTCACTCAGAATTCTACTAACTTCGTCAACCGTATGCAAT
CTCTGAAACAGTCATTAGAAGAGGCTTTAGGAAAGGACAATGTCTCTGTAGATCTACAGATGCTGGCTGAGGACGAAGCA
CTAAACATCACCTTCAATGCTGAAGCTGCTAGCCAGGAAGACTGGGATATCAACGGTCTCGTTGGCTGGGAGCCAGACTA
TCAAGATCCATCTACTTACCTAGACATTTTAGTCCCAGGTAACAGCACTCAGACCAGAACCTACCTTGGATTTGAAGACA
AAGACAATGCTGCTGCTAAAGCTGTAGGACTGGATGAGTATAGCAAACTGATTGAAGAGGCCGGAAACGAAACACAAGAT
GTTGACAAGCGTTATGAAAAATATGCTGCAGCTCAAGCATGGCTGACAGATAGCGCCCTCGTTGTGCCAACTATGAGCAG
CAGAGGAGCAGCACCGTTCATTTCTCGGATTGTGCCATTTACCAACTCTTATGCTCAGACAGGTACAAAAGACGCCAACT
ATCATAAATACGTGGAAATCAGTGATGAGATTGTCACGACTAAAGACTATCAAAAGGCCCAAGAAAAGTGGAAAAAAGAA
AAAGAGGAATCCAATAAAAAGGCCCAAGAAGATCTGGCTAAACATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

58.967

100

0.591
  amiA3 Streptococcus thermophilus LMD-9

57.967

100

0.581
  amiA3 Streptococcus thermophilus LMG 18311

57.36

100

0.575

Multiple sequence alignment