Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SSA_RS10570 Genome accession   NC_009009
Coordinates   2157138..2158505 (-) Length   455 a.a.
NCBI ID   WP_125337611.1    Uniprot ID   -
Organism   Streptococcus sanguinis SK36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2152138..2163505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS10545 (SSA_2152) - 2153133..2153891 (-) 759 WP_011837581.1 ABC transporter ATP-binding protein -
  SSA_RS10550 (SSA_2153) - 2153888..2154754 (-) 867 WP_011837582.1 ABC transporter permease -
  SSA_RS10555 (SSA_2154) - 2154852..2155349 (-) 498 WP_002922537.1 beta-class carbonic anhydrase -
  SSA_RS10560 (SSA_2155) - 2155497..2156192 (-) 696 WP_002908599.1 TIGR00266 family protein -
  SSA_RS10565 (SSA_2156) - 2156306..2157022 (-) 717 WP_002916623.1 TIGR00266 family protein -
  SSA_RS10570 (SSA_2157) radA 2157138..2158505 (-) 1368 WP_125337611.1 DNA repair protein RadA Machinery gene
  SSA_RS10575 (SSA_2158) - 2158511..2159143 (-) 633 WP_011837584.1 methyltransferase domain-containing protein -
  SSA_RS10580 (SSA_2159) - 2159196..2159711 (-) 516 WP_011837585.1 histidine phosphatase family protein -
  SSA_RS10585 (SSA_2160) - 2159713..2160156 (-) 444 WP_011837586.1 dUTP diphosphatase -
  SSA_RS10590 (SSA_2161) - 2160241..2160690 (-) 450 WP_011837587.1 8-oxo-dGTP diphosphatase -
  SSA_RS10595 (SSA_2164) - 2160956..2161645 (-) 690 WP_002893948.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49762.09 Da        Isoelectric Point: 5.7873

>NTDB_id=27548 SSA_RS10570 WP_125337611.1 2157138..2158505(-) (radA) [Streptococcus sanguinis SK36]
MTIAKKKTTFVCQNCEYHSPKYLGRCPNCGSWSSFVEEVEAAEVKHARVSLTGEKTRPMKLAEVTSIDVNRTKTEMDEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHQGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQNIRTE
IEKIKPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLNGLKVPDNIQVIGVTTIGEVLKKVFS

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=27548 SSA_RS10570 WP_125337611.1 2157138..2158505(-) (radA) [Streptococcus sanguinis SK36]
ATCACCATCGCTAAGAAAAAAACGACCTTTGTCTGTCAAAATTGTGAATATCATTCGCCCAAGTATCTAGGCCGTTGTCC
TAACTGCGGCTCTTGGTCTTCTTTCGTTGAGGAAGTAGAAGCTGCAGAAGTCAAGCATGCCCGTGTTTCCTTGACAGGCG
AAAAGACCCGGCCCATGAAGCTGGCTGAGGTCACTTCGATTGATGTCAACCGGACCAAGACAGAAATGGATGAGTTCAAC
CGTGTGCTGGGTGGTGGCGTCGTGCCTGGCAGTTTGGTCCTGATTGGCGGGGATCCCGGCATCGGGAAGTCCACCCTGCT
TCTGCAGGTATCCACTCAACTTTCTCATCAGGGCACCGTCCTTTATGTCAGCGGGGAGGAATCGGCTGAGCAGATTAAGC
TGCGGGCGGAACGCCTCGGTGATATTGACAGTGAATTTTATCTCTACGCCGAGACCAATATGCAAAATATCCGCACAGAG
ATTGAGAAGATTAAGCCAGATTTTCTGATTATTGACTCCATTCAGACAGTGATGTCGCCGGAAATTTCCAGTGTTCAAGG
CTCTGTTTCTCAGGTTCGAGAGGTGACAGCTGAGCTCATGCAGCTGGCCAAGACCAATAATATTGCGACCTTTATCGTTG
GTCACATGACCAAGGAAGGAACCTTAGCTGGTCCTCGAACTTTGGAGCACATGGTGGACACCGTGCTTTATTTTGAGGGT
GAACGTCAGCATACTTTCCGTATCTTGAGAGCGGTCAAGAACCGCTTTGGCTCAACCAATGAGATTGGCATTTTTGAAAT
GCAGTCTGGTGGGCTAGTTGAGGTTGTCAATCCAAGTGAAGTCTTTCTAGAAGAGCGTCTGGATGGCGCGACAGGTTCGT
CTATTGTCGTGACCATGGAAGGGACGCGGCCGATTTTGGCAGAGGTGCAGGCTTTGGTGACACCAACCATGTTCGGCAAT
GCTAAGCGGACCACAACTGGACTGGACTTTAACCGAGCCAGCCTCATCATGGCGGTTCTGGAAAAACGGGCAGGGCTCCT
CCTGCAAAATCAAGACGCCTACCTCAAATCAGCTGGTGGTGTCAAGCTAGATGAGCCAGCCATTGATTTGGCAGTAGCGG
TCGCCATTGCTTCCAGCTACAAGGATCTGCCTACCAATCCTCAAGAGTGCTTTATCGGTGAAATTGGCCTGACTGGTGAA
ATCCGTCGAGTCAATCGCATCGAGCAGCGCATCAACGAAGCAGCAAAGCTGGGCTTCACCAAAGTCTACGCTCCTAAAAA
CTCTCTGAACGGCCTCAAAGTTCCAGACAATATCCAAGTCATCGGTGTGACGACGATTGGGGAAGTTTTAAAGAAGGTAT
TTTCTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(362-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.611

99.56

0.912
  radA Streptococcus pneumoniae D39

91.391

99.56

0.91
  radA Streptococcus pneumoniae R6

91.391

99.56

0.91
  radA Streptococcus pneumoniae Rx1

91.391

99.56

0.91
  radA Streptococcus mitis SK321

91.391

99.56

0.91
  radA Streptococcus pneumoniae TIGR4

91.391

99.56

0.91
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

99.56

0.622

Multiple sequence alignment