Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SSA_RS11930 Genome accession   NC_009009
Coordinates   2163963..2164751 (-) Length   262 a.a.
NCBI ID   WP_398578198.1    Uniprot ID   -
Organism   Streptococcus sanguinis SK36     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2158963..2169751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS10580 (SSA_2159) - 2159196..2159711 (-) 516 WP_011837585.1 histidine phosphatase family protein -
  SSA_RS10585 (SSA_2160) - 2159713..2160156 (-) 444 WP_011837586.1 dUTP diphosphatase -
  SSA_RS10590 (SSA_2161) - 2160241..2160690 (-) 450 WP_011837587.1 8-oxo-dGTP diphosphatase -
  SSA_RS10595 (SSA_2164) - 2160956..2161645 (-) 690 WP_002893948.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  SSA_RS10600 (SSA_2165) amiA 2161874..2163847 (+) 1974 WP_011837589.1 peptide ABC transporter substrate-binding protein Regulator
  SSA_RS11930 rcrQ 2163963..2164751 (-) 789 WP_398578198.1 ABC transporter ATP-binding protein Regulator
  SSA_RS11935 - 2164887..2165618 (-) 732 Protein_2058 ABC transporter ATP-binding protein -
  SSA_RS11940 - 2165594..2165732 (-) 139 Protein_2059 ABC transporter ATP-binding protein -
  SSA_RS10610 (SSA_2167) - 2165734..2167440 (-) 1707 WP_033179225.1 ABC transporter ATP-binding protein -
  SSA_RS10615 (SSA_2168) - 2167601..2168623 (+) 1023 WP_002899188.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  SSA_RS10620 (SSA_2169) galU 2168640..2169545 (+) 906 WP_033179226.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29169.86 Da        Isoelectric Point: 4.4043

>NTDB_id=27557 SSA_RS11930 WP_398578198.1 2163963..2164751(-) (rcrQ) [Streptococcus sanguinis SK36]
MFDAPEEVRPENAPAFIELTDSVEIKHVDFSYVEGKPILKDVSILAPKGKMTAVVGPTGSGKTTIMNLLNRFYDVDSGSI
EFDGRDIRDYELDSLRSHVGIVLQDSVLFSGTIRDNIRFGVPDASQEMVETAARATHIHDYIESLPDKYDTLVDDDQNIF
STGQKQLISIARTLLTDPQVLILDEATSNVDTVTESKIQQAMEAVVAGRTSFVIAHRLKTILNADQIIVLKDGEVIEQGD
HHQLLKLGGFYSELYHNQFVFE

Nucleotide


Download         Length: 789 bp        

>NTDB_id=27557 SSA_RS11930 WP_398578198.1 2163963..2164751(-) (rcrQ) [Streptococcus sanguinis SK36]
ATGTTTGATGCGCCTGAGGAAGTCCGACCAGAGAATGCACCTGCTTTCATAGAGCTTACAGACTCCGTGGAGATCAAGCA
TGTGGACTTCTCTTATGTAGAAGGCAAGCCTATTCTCAAAGACGTATCTATTTTAGCCCCTAAGGGCAAGATGACGGCTG
TTGTTGGACCGACTGGTTCAGGTAAGACGACCATTATGAACCTGCTCAATCGTTTTTATGATGTGGATAGTGGCAGCATT
GAGTTTGACGGTCGCGACATTCGGGACTATGAGCTGGATAGCTTACGGAGCCATGTGGGCATTGTCTTGCAGGATTCGGT
GCTCTTTAGTGGTACGATTCGGGACAATATCCGCTTCGGTGTGCCGGATGCCAGTCAGGAGATGGTAGAAACGGCTGCGC
GTGCGACTCATATCCATGACTATATCGAAAGTCTGCCAGACAAATACGATACTCTGGTAGATGATGACCAGAATATTTTC
TCAACTGGGCAGAAACAGCTGATTTCCATCGCTAGAACTTTGCTGACTGATCCGCAAGTCTTGATTTTGGACGAAGCGAC
TTCCAATGTCGATACGGTGACGGAGAGCAAGATTCAGCAAGCCATGGAAGCCGTTGTGGCTGGCCGAACTAGCTTTGTCA
TTGCTCACCGCCTCAAGACAATTCTCAATGCCGACCAGATTATCGTCCTCAAAGACGGAGAGGTTATCGAACAGGGCGAT
CATCATCAGCTCCTTAAACTCGGCGGTTTCTATTCAGAACTTTATCACAACCAGTTTGTCTTTGAGTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(39-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

48.649

98.855

0.481

Multiple sequence alignment