Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CSC02_RS21010 Genome accession   NZ_CP027142
Coordinates   4241370..4241894 (+) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter hormaechei subsp. hoffmannii strain AR_0365     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4236370..4246894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC02_RS20985 (CSC02_4243) aphA 4236694..4237407 (+) 714 WP_003860292.1 acid phosphatase AphA -
  CSC02_RS20990 (CSC02_4244) - 4237520..4237936 (+) 417 WP_023305263.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  CSC02_RS20995 (CSC02_4245) - 4237939..4238292 (+) 354 WP_006810472.1 MmcQ/YjbR family DNA-binding protein -
  CSC02_RS21000 (CSC02_4246) uvrA 4238296..4241118 (-) 2823 WP_003860287.1 excinuclease ABC subunit UvrA -
  CSC02_RS21010 (CSC02_4247) ssb 4241370..4241894 (+) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CSC02_RS21015 - 4241955..4242236 (-) 282 WP_105322913.1 YjcB family protein -
  CSC02_RS21020 (CSC02_4250) - 4242668..4244068 (+) 1401 WP_105322914.1 sensor domain-containing diguanylate cyclase -
  CSC02_RS21025 (CSC02_4251) - 4244334..4245899 (+) 1566 WP_105322915.1 EAL domain-containing protein -
  CSC02_RS21030 (CSC02_4252) soxS 4245906..4246232 (-) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  CSC02_RS21035 (CSC02_4253) soxR 4246331..4246789 (+) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=275242 CSC02_RS21010 WP_003860284.1 4241370..4241894(+) (ssb) [Enterobacter hormaechei subsp. hoffmannii strain AR_0365]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=275242 CSC02_RS21010 WP_003860284.1 4241370..4241894(+) (ssb) [Enterobacter hormaechei subsp. hoffmannii strain AR_0365]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAGGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTCAACGTAGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCTCAGGGCGGCAATCAGTTTAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374

Multiple sequence alignment