Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | FORC77_RS10980 | Genome accession | NZ_CP027030 |
| Coordinates | 2220324..2220626 (-) | Length | 100 a.a. |
| NCBI ID | WP_011078144.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain FORC_077 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2215324..2225626
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC77_RS10955 (FORC77_1984) | - | 2215867..2217081 (+) | 1215 | WP_011080966.1 | pyridoxal phosphate-dependent aminotransferase | - |
| FORC77_RS10960 (FORC77_1985) | yfbR | 2217198..2217746 (+) | 549 | WP_242629366.1 | 5'-deoxynucleotidase | - |
| FORC77_RS10965 (FORC77_1986) | - | 2217752..2219083 (+) | 1332 | WP_011078141.1 | anti-phage deoxyguanosine triphosphatase | - |
| FORC77_RS10970 (FORC77_1987) | - | 2219105..2219713 (-) | 609 | WP_011078142.1 | DTW domain-containing protein | - |
| FORC77_RS10975 (FORC77_1988) | rrtA | 2219717..2220277 (+) | 561 | WP_307796316.1 | rhombosortase | - |
| FORC77_RS10980 (FORC77_1989) | comEA | 2220324..2220626 (-) | 303 | WP_011078144.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| FORC77_RS10985 (FORC77_1990) | ppiD | 2220759..2222618 (-) | 1860 | WP_131069975.1 | peptidylprolyl isomerase | - |
| FORC77_RS10990 (FORC77_1991) | - | 2222795..2223067 (-) | 273 | WP_013572181.1 | HU family DNA-binding protein | - |
| FORC77_RS10995 (FORC77_1992) | lon | 2223261..2225612 (-) | 2352 | WP_011078147.1 | endopeptidase La | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 10866.71 Da Isoelectric Point: 9.6573
>NTDB_id=274603 FORC77_RS10980 WP_011078144.1 2220324..2220626(-) (comEA) [Vibrio vulnificus strain FORC_077]
MKQVITLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL
MKQVITLLAMLMAFSFPSVSFADSATKAADKYEGIEISVNINTATAEEIAMMLKGVGIKKAQQIVDFREANGPFKTVDEL
AQVKGIGKSTIEKNQSRIKL
Nucleotide
Download Length: 303 bp
>NTDB_id=274603 FORC77_RS10980 WP_011078144.1 2220324..2220626(-) (comEA) [Vibrio vulnificus strain FORC_077]
ATGAAACAGGTAATTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGCATTGAGATTTCCGTCAATATCAACACAGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGATTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA
ATGAAACAGGTAATTACCCTTTTAGCCATGCTAATGGCATTCTCTTTTCCTTCCGTTTCTTTTGCGGACTCTGCAACGAA
AGCGGCCGATAAATATGAAGGCATTGAGATTTCCGTCAATATCAACACAGCGACAGCAGAAGAAATTGCCATGATGTTAA
AAGGCGTTGGTATTAAAAAAGCTCAGCAAATTGTTGATTTTAGAGAAGCTAATGGACCGTTTAAAACGGTTGATGAGTTA
GCTCAAGTGAAAGGAATCGGTAAATCAACGATTGAGAAAAATCAGTCACGGATTAAGTTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
59 |
100 |
0.59 |
| comEA | Vibrio campbellii strain DS40M4 |
54 |
100 |
0.54 |
| comEA | Vibrio cholerae C6706 |
52.041 |
98 |
0.51 |
| comEA | Vibrio cholerae strain A1552 |
52.041 |
98 |
0.51 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
60 |
60 |
0.36 |