Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FORC77_RS01980 Genome accession   NZ_CP027030
Coordinates   413483..414022 (+) Length   179 a.a.
NCBI ID   WP_131069621.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_077     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 408483..419022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC77_RS01965 (FORC77_0354) uvrA 408511..411333 (-) 2823 WP_131069620.1 excinuclease ABC subunit UvrA -
  FORC77_RS01970 (FORC77_0355) galU 411476..412348 (-) 873 WP_011079387.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  FORC77_RS01975 (FORC77_0356) qstR 412536..413183 (-) 648 WP_045596394.1 response regulator transcription factor Regulator
  FORC77_RS01980 (FORC77_0357) ssb 413483..414022 (+) 540 WP_131069621.1 single-stranded DNA-binding protein Machinery gene
  FORC77_RS01985 (FORC77_0358) csrD 414175..416172 (+) 1998 WP_043877331.1 RNase E specificity factor CsrD -
  FORC77_RS01990 (FORC77_0359) - 416185..417645 (+) 1461 WP_011079391.1 hypothetical protein -
  FORC77_RS01995 (FORC77_0360) gspM 417642..418292 (+) 651 WP_011079392.1 type II secretion system protein GspM -
  FORC77_RS02000 (FORC77_0361) - 418285..418605 (+) 321 WP_011079393.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19780.00 Da        Isoelectric Point: 5.2358

>NTDB_id=274581 FORC77_RS01980 WP_131069621.1 413483..414022(+) (ssb) [Vibrio vulnificus strain FORC_077]
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRQQQGGAPAMGGAPQLQQGGWGQPQQPAAQPSYQKQAPAQQQPM
QSQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=274581 FORC77_RS01980 WP_131069621.1 413483..414022(+) (ssb) [Vibrio vulnificus strain FORC_077]
ATGGCCAGCCGTGGAATTAACAAAGTAATCTTGGTAGGGAACTTAGGTAACGACCCTGAAATTCGTTACATGCCAAGTGG
CGGTGCGGTGGCGAATATCACCGTTGCAACTTCAGAAACTTGGCGCGACAAAGCGACAGGCGAGCCGCGTGAGAAAACAG
AATGGCACCGTGTGACGTTATACGGCAAGCTGGCAGAAGTCGCGGGTGAATACCTACGCAAAGGTTCTCAAGTATACATT
GAAGGACAACTGCAAACGCGTAAATGGCAAGACCAAAATGGTCAAGACCGTTATTCAACTGAAGTCGTTGTACAAGGCTA
CAATGGCATTATGCAAATGTTGGGTGGTCGTCAGCAGCAAGGTGGCGCTCCAGCTATGGGTGGTGCTCCGCAGCTGCAAC
AAGGTGGTTGGGGTCAGCCTCAACAGCCAGCCGCACAGCCGTCTTACCAAAAGCAGGCTCCAGCGCAACAACAGCCAATG
CAGTCTCAGCCTCAGTACAATGAGCCGCCAATGGACTTTGATGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

83.333

100

0.838
  ssb Glaesserella parasuis strain SC1401

53.191

100

0.559
  ssb Neisseria meningitidis MC58

49.171

100

0.497
  ssb Neisseria gonorrhoeae MS11

47.802

100

0.486

Multiple sequence alignment