Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   FORC77_RS01975 Genome accession   NZ_CP027030
Coordinates   412536..413183 (-) Length   215 a.a.
NCBI ID   WP_045596394.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_077     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 407536..418183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC77_RS01965 (FORC77_0354) uvrA 408511..411333 (-) 2823 WP_131069620.1 excinuclease ABC subunit UvrA -
  FORC77_RS01970 (FORC77_0355) galU 411476..412348 (-) 873 WP_011079387.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  FORC77_RS01975 (FORC77_0356) qstR 412536..413183 (-) 648 WP_045596394.1 response regulator transcription factor Regulator
  FORC77_RS01980 (FORC77_0357) ssb 413483..414022 (+) 540 WP_131069621.1 single-stranded DNA-binding protein Machinery gene
  FORC77_RS01985 (FORC77_0358) csrD 414175..416172 (+) 1998 WP_043877331.1 RNase E specificity factor CsrD -
  FORC77_RS01990 (FORC77_0359) - 416185..417645 (+) 1461 WP_011079391.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24691.67 Da        Isoelectric Point: 9.8565

>NTDB_id=274580 FORC77_RS01975 WP_045596394.1 412536..413183(-) (qstR) [Vibrio vulnificus strain FORC_077]
MRKSSYARKPFFISLQNEQTPEFVTVLAKQIQMEIPVITPATLMQADPNHRNRILLIDHQQHKVLLREIKNLPLIWKGFE
TVLCNVPSRLTTEELIGFGQCKAIFYRDTAMTDMAKGLNSVINGKSWLPRDVSAQLIHYYRNMVCSHTSPVNVDLTMREI
QVLRCVQSGKSNSQIAEDLFISEFTVKSHLYQTFRKLSVKNRVQAAAWADQNLIS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=274580 FORC77_RS01975 WP_045596394.1 412536..413183(-) (qstR) [Vibrio vulnificus strain FORC_077]
ATGAGAAAATCTTCTTACGCGCGGAAGCCATTTTTTATCAGTTTGCAAAACGAACAAACTCCTGAGTTCGTCACGGTATT
AGCTAAACAGATTCAAATGGAGATCCCTGTGATTACCCCGGCAACGCTCATGCAAGCCGATCCCAATCATCGTAATCGCA
TCTTATTGATTGATCATCAGCAACATAAGGTGCTGTTGAGAGAAATTAAAAACCTACCCCTGATATGGAAAGGGTTTGAA
ACGGTCCTGTGTAATGTACCTAGCCGATTGACGACTGAGGAACTGATCGGTTTTGGCCAGTGCAAAGCGATCTTCTACCG
AGACACCGCCATGACAGACATGGCCAAAGGACTAAATTCGGTGATTAATGGCAAAAGCTGGCTGCCACGCGACGTCAGCG
CACAACTCATCCACTACTATCGAAATATGGTTTGTTCACACACTTCACCAGTGAATGTGGATCTCACGATGAGAGAAATT
CAAGTGTTACGCTGCGTGCAGTCTGGCAAGTCAAATTCTCAAATCGCCGAAGATCTTTTCATTAGTGAATTCACCGTAAA
GTCGCATCTCTATCAAACCTTTAGAAAGCTCTCCGTGAAGAATCGTGTCCAAGCTGCCGCGTGGGCTGACCAAAATTTGA
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

60.93

100

0.609
  qstR Vibrio campbellii strain DS40M4

60.93

100

0.609
  qstR Vibrio cholerae strain A1552

47.196

99.535

0.47

Multiple sequence alignment