Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MPE_RS00840 Genome accession   NC_008825
Coordinates   182883..184400 (-) Length   505 a.a.
NCBI ID   WP_036232598.1    Uniprot ID   W7VZ72
Organism   Methylibium petroleiphilum PM1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 177883..189400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPE_RS22600 (Mpe_A0167) - 178587..179126 (-) 540 WP_148210865.1 hypothetical protein -
  MPE_RS00830 (Mpe_A0168) metH 179396..182167 (+) 2772 WP_011827769.1 methionine synthase -
  MPE_RS00835 (Mpe_A0169) - 182273..182851 (+) 579 WP_011827770.1 glycine zipper 2TM domain-containing protein -
  MPE_RS00840 (Mpe_A0170) comM 182883..184400 (-) 1518 WP_036232598.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MPE_RS00845 (Mpe_A0171) - 184647..184985 (+) 339 WP_011827772.1 P-II family nitrogen regulator -
  MPE_RS00850 (Mpe_A0172) - 185012..186538 (+) 1527 WP_011827773.1 ammonium transporter -
  MPE_RS00855 (Mpe_A0173) gshA 186692..187987 (+) 1296 WP_011827774.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 53427.06 Da        Isoelectric Point: 7.6152

>NTDB_id=27413 MPE_RS00840 WP_036232598.1 182883..184400(-) (comM) [Methylibium petroleiphilum PM1]
MSLAVVHSRALDGLDAPEVTVEVHLANGLPSFTLVGLADTEVKEARERVRAALLNSGLAFPHNQRITVNLAPADLPKESG
RFDLPIALGILAASGQIDAGRLADLEFAGELSLAGDLRPVRGALAMALAARHEGRERPLVLPDPSAREAALIEGLQVRSA
KHLLDVVSALLPGDAAQPLSAATPWPRPPTAPRWGELRDVKGQAAAKRALEVAAAGQHSVLLVGPPGAGKSMLAQRFAGL
LPPLSDEQALESAAVLSLVGRFDAGRWRERVLRAPHHSASAVALVGGGSPPRPGEISLAHHGVLFLDEWPEFPRAALEAL
REPLETGRITISRAARQAEFPARFQLIAAMNPCPCGHAGSTLRTCRCSSDMVARYQGRISGPLLDRIDLQVEVPAVGPEA
LSALPDGDPSEAVAERAARARERQHRRQGCSNAFLDSNGIDTHVAIEPGAAQFMQATSLRLGWSARGQHRLLRVARTIAD
LAGAEHIGVGHVAEAIQYRRVLAAG

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=27413 MPE_RS00840 WP_036232598.1 182883..184400(-) (comM) [Methylibium petroleiphilum PM1]
ATGTCGCTCGCCGTTGTCCACAGCCGTGCTCTCGATGGGCTCGATGCCCCCGAAGTCACCGTCGAGGTGCATCTGGCGAA
CGGTCTGCCGAGTTTCACGCTCGTCGGTCTGGCCGACACCGAAGTCAAGGAGGCGCGTGAGCGAGTCCGTGCCGCACTGC
TGAACAGCGGCCTGGCGTTTCCCCACAACCAGCGCATCACGGTCAATCTGGCGCCAGCCGATCTGCCCAAGGAGTCGGGC
CGCTTCGACCTGCCGATCGCGCTGGGCATCCTGGCCGCCAGCGGCCAGATCGATGCGGGGCGACTGGCCGATCTGGAGTT
CGCCGGAGAGTTGTCGCTCGCCGGCGACCTGCGGCCGGTACGGGGTGCGCTGGCGATGGCGCTGGCCGCGCGACATGAGG
GCCGGGAACGCCCGCTGGTGCTGCCGGACCCGAGTGCGCGCGAGGCCGCCTTGATCGAAGGACTGCAGGTGCGCTCCGCC
AAGCACTTGCTCGACGTGGTCAGTGCGCTGCTGCCCGGCGACGCAGCGCAGCCCCTGTCGGCGGCCACGCCCTGGCCGCG
TCCGCCGACGGCACCCCGGTGGGGCGAGTTGCGCGACGTGAAGGGGCAAGCCGCCGCCAAGCGCGCGCTCGAGGTTGCCG
CGGCGGGCCAGCACAGCGTGCTGCTGGTCGGTCCACCAGGGGCCGGCAAGTCGATGCTGGCGCAGCGCTTCGCCGGCCTG
CTGCCACCGCTGAGCGACGAACAGGCGCTGGAGTCCGCGGCCGTGCTGAGCCTGGTGGGACGCTTCGACGCCGGTCGCTG
GCGCGAGCGCGTGCTGCGTGCCCCGCACCACAGTGCTTCCGCGGTCGCGCTGGTCGGCGGCGGATCACCACCGCGGCCGG
GCGAGATTTCGCTGGCTCATCACGGCGTGCTGTTCCTCGACGAGTGGCCGGAGTTTCCTCGCGCCGCGCTGGAGGCCCTG
CGTGAGCCCTTGGAAACGGGTCGCATCACGATCTCGCGCGCGGCGCGCCAGGCCGAATTCCCCGCGCGCTTCCAGTTGAT
CGCGGCGATGAACCCCTGCCCTTGCGGCCACGCCGGCTCCACATTGAGAACCTGCCGCTGCTCCAGCGACATGGTGGCTC
GTTACCAGGGCCGCATCAGCGGCCCGCTGCTCGACCGCATCGACCTGCAGGTGGAGGTGCCGGCGGTCGGCCCCGAGGCG
CTGTCGGCCCTTCCCGACGGAGACCCGAGCGAGGCCGTCGCCGAACGTGCCGCACGAGCGCGCGAACGGCAGCACCGGCG
CCAGGGTTGCAGCAACGCATTCCTCGACAGCAACGGCATCGACACACACGTGGCGATCGAGCCCGGTGCGGCGCAGTTCA
TGCAGGCCACGTCCTTGCGACTCGGTTGGTCGGCTCGCGGCCAGCACCGCCTGTTGCGGGTGGCGCGCACCATCGCCGAC
CTGGCCGGTGCCGAGCACATCGGTGTCGGCCACGTGGCCGAGGCGATCCAGTACCGCCGCGTGCTGGCGGCAGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-499)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(197-398)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W7VZ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.485

100

0.515
  comM Glaesserella parasuis strain SC1401

51.287

100

0.513
  comM Vibrio cholerae strain A1552

51.098

99.208

0.507
  comM Vibrio campbellii strain DS40M4

50.996

99.406

0.507
  comM Legionella pneumophila str. Paris

49.606

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.606

100

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.998

100

0.432

Multiple sequence alignment