Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VEIS_RS16115 Genome accession   NC_008786
Coordinates   3699390..3700925 (+) Length   511 a.a.
NCBI ID   WP_041950102.1    Uniprot ID   -
Organism   Verminephrobacter eiseniae EF01-2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3694390..3705925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEIS_RS16095 (Veis_3312) glcE 3695213..3696349 (-) 1137 WP_011811034.1 glycolate oxidase subunit GlcE -
  VEIS_RS16100 (Veis_3313) - 3696475..3698013 (-) 1539 WP_011811035.1 ammonium transporter -
  VEIS_RS16105 (Veis_3314) glnK 3698040..3698378 (-) 339 WP_011811036.1 P-II family nitrogen regulator -
  VEIS_RS16110 (Veis_3315) - 3698467..3699177 (-) 711 WP_011811037.1 TorF family putative porin -
  VEIS_RS16115 (Veis_3316) comM 3699390..3700925 (+) 1536 WP_041950102.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VEIS_RS16120 (Veis_3317) - 3701055..3701957 (+) 903 WP_011811039.1 LysR substrate-binding domain-containing protein -
  VEIS_RS26590 (Veis_3318) - 3702033..3703466 (-) 1434 WP_011811040.1 MmgE/PrpD family protein -
  VEIS_RS16130 (Veis_3319) - 3703664..3704818 (+) 1155 WP_041950932.1 acyl-CoA dehydrogenase family protein -
  VEIS_RS16135 (Veis_3320) - 3704862..3705821 (+) 960 WP_011811042.1 tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 53506.30 Da        Isoelectric Point: 9.3423

>NTDB_id=27315 VEIS_RS16115 WP_041950102.1 3699390..3700925(+) (comM) [Verminephrobacter eiseniae EF01-2]
MSLALVQSRALLGLQAPCVTVEVHLANGLPSFTLVGLAEVEVKEARERVRSALQNAGLEFPHNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDASRLAGHEFAGELSLTGELRPVRGALATSLALQTQQIDVQLVLPPGSAEEAALVPGAQVVRA
RHLLDVVRAFLPPGSIAGDAKDSASDGWSRLQPRPMAASTSGPDMADVKGQATAKRALEIAAAGGHSLLMVGPPGAGKSM
LAQRFAGLLPAMTVSEALESAALASLAGRFRAEAWGQRPTIAPHHSASAVALVGGGAPPRPGEISLAHQGVLFLDELPEF
PRAALEALRQPLESGHISIARAAQRADFPARFQLVAAMNPCPCGFAGATQRACRCTPDQISRYQSKLSGPLLDRIDLHVE
VPALPAEQLLQASAGETSAAIRERVARARALALARQGKSNQALQGQEIDTQLHLNAGATQFLHSAATRLGWSARSTHRAL
KVARSIADLAGSPGTELGHVAEAMQYRRVLR

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=27315 VEIS_RS16115 WP_041950102.1 3699390..3700925(+) (comM) [Verminephrobacter eiseniae EF01-2]
ATGAGTCTTGCTTTGGTGCAAAGCCGCGCCCTTTTGGGGTTGCAGGCGCCCTGTGTCACCGTCGAAGTGCACTTGGCCAA
CGGCTTGCCCAGCTTCACGCTGGTGGGGCTGGCCGAGGTCGAGGTCAAGGAAGCGCGCGAGCGGGTGCGCTCGGCGCTGC
AGAACGCGGGGCTGGAGTTCCCGCACAACAAGCGCATCACCGTCAACCTCGCGCCGGCCGATCTGCCCAAGGACTCCGGG
CGCTTCGATCTGCCGATTGCGCTGGGCATCCTGGCGGCCAGCGGCCAGATCGACGCCAGCCGTCTGGCCGGCCATGAGTT
TGCCGGCGAGCTGTCGCTGACCGGCGAACTGCGCCCGGTGCGCGGCGCGCTGGCCACCAGCCTGGCGCTGCAGACGCAGC
AGATCGACGTGCAACTGGTGCTGCCCCCCGGCAGCGCCGAAGAGGCCGCCCTGGTGCCCGGCGCACAGGTCGTGCGCGCG
CGCCATCTGCTGGATGTGGTGCGGGCCTTTCTGCCGCCGGGCAGCATCGCCGGGGACGCCAAGGACAGCGCCAGCGACGG
CTGGAGCCGGCTGCAACCCAGGCCGATGGCCGCCAGCACCAGCGGCCCCGACATGGCCGATGTGAAGGGCCAGGCCACGG
CCAAGCGCGCGCTGGAGATTGCCGCCGCTGGCGGCCACAGCCTGCTGATGGTCGGCCCGCCCGGCGCGGGCAAGTCGATG
CTGGCGCAGCGTTTTGCCGGACTGCTGCCGGCGATGACGGTGTCCGAGGCGCTGGAGAGCGCGGCGCTGGCCAGCCTGGC
CGGGCGCTTTCGTGCCGAAGCCTGGGGGCAGCGGCCGACCATCGCGCCGCACCATAGCGCCAGCGCGGTGGCGCTGGTGG
GCGGCGGCGCGCCGCCACGGCCGGGCGAGATCTCGCTGGCCCACCAGGGCGTGCTCTTTCTGGACGAGTTGCCCGAGTTT
CCCCGGGCCGCGCTCGAAGCGCTGCGCCAGCCACTGGAGAGCGGCCACATCAGCATCGCGCGCGCGGCGCAGCGGGCCGA
CTTTCCGGCCAGGTTCCAACTGGTGGCGGCGATGAACCCCTGCCCCTGCGGCTTTGCCGGCGCCACACAGCGCGCCTGCC
GCTGCACGCCGGACCAGATCAGCCGCTACCAGAGCAAGCTCAGCGGCCCGCTGCTCGACCGCATCGACCTGCATGTGGAA
GTGCCCGCCCTGCCGGCCGAACAACTGCTGCAAGCCAGCGCCGGCGAGACGAGCGCCGCGATCCGCGAACGTGTCGCGCG
CGCCCGCGCACTGGCATTGGCCCGGCAGGGCAAGAGCAACCAGGCGCTGCAAGGGCAGGAGATCGACACCCAACTGCACC
TGAACGCCGGCGCCACCCAATTCCTGCACAGCGCCGCAACGCGGCTGGGCTGGTCGGCGCGCAGCACGCACCGCGCGCTG
AAGGTGGCGCGCAGCATCGCCGACCTGGCCGGCTCGCCCGGCACCGAATTGGGCCATGTGGCCGAGGCCATGCAGTACCG
GCGGGTGCTGCGGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(204-408)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(415-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

53.167

100

0.542
  comM Vibrio cholerae strain A1552

52.335

100

0.526
  comM Glaesserella parasuis strain SC1401

51.456

100

0.519
  comM Vibrio campbellii strain DS40M4

51.267

100

0.515
  comM Legionella pneumophila str. Paris

49.13

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.13

100

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.748

100

0.421

Multiple sequence alignment