Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C1P60_RS11740 Genome accession   NZ_CP026814
Coordinates   2136777..2137292 (+) Length   171 a.a.
NCBI ID   WP_000168307.1    Uniprot ID   -
Organism   Shigella boydii strain 83-578     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2131777..2142292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1P60_RS11720 aphA 2132066..2132779 (+) 714 WP_001317548.1 acid phosphatase AphA -
  C1P60_RS11725 - 2132890..2133306 (+) 417 WP_000270377.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C1P60_RS11730 - 2133310..2133666 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  C1P60_RS11735 uvrA 2133701..2136523 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  C1P60_RS11740 ssb 2136777..2137292 (+) 516 WP_000168307.1 single-stranded DNA-binding protein SSB1 Machinery gene
  C1P60_RS11745 - 2137391..2137672 (-) 282 WP_001295689.1 YjcB family protein -
  C1P60_RS11750 pdeC 2138102..2138836 (+) 735 Protein_2093 c-di-GMP phosphodiesterase PdeC -
  C1P60_RS11755 - 2138893..2139591 (+) 699 Protein_2094 IS1 family transposase -
  C1P60_RS11760 pdeC 2139603..2140466 (+) 864 Protein_2095 c-di-GMP phosphodiesterase PdeC -
  C1P60_RS11765 soxS 2140469..2140792 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  C1P60_RS11770 soxR 2140878..2141342 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18264.25 Da        Isoelectric Point: 5.2358

>NTDB_id=272750 C1P60_RS11740 WP_000168307.1 2136777..2137292(+) (ssb) [Shigella boydii strain 83-578]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNE
PPMDFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=272750 C1P60_RS11740 WP_000168307.1 2136777..2137292(+) (ssb) [Shigella boydii strain 83-578]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCTCAGC
AGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCTCCGGCAGCGCCGTCTAACGAG
CCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.481

100

0.778
  ssb Glaesserella parasuis strain SC1401

58.242

100

0.62
  ssb Neisseria meningitidis MC58

48.588

100

0.503
  ssb Neisseria gonorrhoeae MS11

48.588

100

0.503
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.374

Multiple sequence alignment