Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   D1O36_RS10975 Genome accession   NZ_CP031881
Coordinates   262889..263257 (+) Length   122 a.a.
NCBI ID   WP_255136094.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST106     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 257889..268257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1O36_RS01455 (D1O36_01455) - 258586..259095 (+) 510 WP_011680717.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  D1O36_RS01460 (D1O36_01460) - 259406..259963 (+) 558 WP_111679227.1 ECF transporter S component -
  D1O36_RS01465 (D1O36_01465) - 259966..260616 (+) 651 WP_134973069.1 phosphatase PAP2 family protein -
  D1O36_RS01470 (D1O36_01470) comR 260811..261710 (+) 900 WP_100262298.1 helix-turn-helix domain-containing protein Regulator
  D1O36_RS10965 - 261948..262244 (+) 297 Protein_236 cysteine peptidase family C39 domain-containing protein -
  D1O36_RS10970 comA 262410..262805 (+) 396 WP_252989162.1 ABC transporter transmembrane domain-containing protein Regulator
  D1O36_RS10975 (D1O36_01480) comA 262889..263257 (+) 369 WP_255136094.1 ABC transporter transmembrane domain-containing protein Regulator
  D1O36_RS01485 (D1O36_01485) - 263342..264518 (+) 1177 Protein_239 IS256-like element IS1191 family transposase -
  D1O36_RS01490 (D1O36_01490) comA 264697..265305 (+) 609 WP_255136095.1 ATP-binding cassette domain-containing protein Regulator
  D1O36_RS01495 (D1O36_01495) - 265412..265744 (+) 333 WP_024704184.1 DUF805 domain-containing protein -
  D1O36_RS10460 - 265890..266369 (-) 480 WP_224107489.1 DUF4153 domain-containing protein -
  D1O36_RS10465 - 266811..267182 (-) 372 WP_224107488.1 hypothetical protein -
  D1O36_RS01515 (D1O36_01515) - 267587..268102 (+) 516 WP_024704185.1 AmiS/UreI family transporter -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 14052.29 Da        Isoelectric Point: 9.6924

>NTDB_id=272637 D1O36_RS10975 WP_255136094.1 262889..263257(+) (comA) [Streptococcus thermophilus strain ST106]
MEANSQVNTAVIDDLRGIETLKSLRVEERRYREIEVKFHDYLKKSLSKAKWQLTQDGLKTVVQLVSNVFILWYGAQLVME
GQLSAGQLITYNMLLNYFTTSLINIINLQSKIQQAKVANNCR

Nucleotide


Download         Length: 369 bp        

>NTDB_id=272637 D1O36_RS10975 WP_255136094.1 262889..263257(+) (comA) [Streptococcus thermophilus strain ST106]
ATGGAGGCAAATAGTCAGGTCAATACCGCTGTTATTGATGATTTGCGAGGTATTGAAACCTTAAAATCCTTGAGGGTTGA
GGAAAGACGCTATCGAGAAATTGAGGTGAAATTCCATGACTATTTGAAGAAGTCTTTGTCTAAGGCCAAGTGGCAATTAA
CGCAGGATGGGTTAAAGACAGTGGTTCAGTTAGTTTCTAATGTCTTTATCCTCTGGTATGGGGCACAATTGGTCATGGAA
GGGCAACTATCTGCAGGTCAGTTGATTACCTATAATATGTTGTTGAATTATTTTACAACTTCTTTAATTAATATCATCAA
TCTCCAATCTAAAATTCAGCAAGCCAAAGTCGCCAATAATTGTCGGTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus pneumoniae TIGR4

55.833

98.361

0.549
  comA Streptococcus mitis SK321

55.833

98.361

0.549
  comA Streptococcus pneumoniae Rx1

55.833

98.361

0.549
  comA Streptococcus pneumoniae D39

55.833

98.361

0.549
  comA Streptococcus pneumoniae R6

55.833

98.361

0.549
  comA Streptococcus mitis NCTC 12261

55.833

98.361

0.549
  comA Streptococcus gordonii str. Challis substr. CH1

53.782

97.541

0.525
  comA/nlmT Streptococcus mutans UA159

50.42

97.541

0.492