Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ECE24377A_RS20395 Genome accession   NC_009801
Coordinates   3762249..3763373 (-) Length   374 a.a.
NCBI ID   WP_000228531.1    Uniprot ID   A7ZSH4
Organism   Escherichia coli O139:H28 str. E24377A     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3757249..3768373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECE24377A_RS20365 yrdA 3759049..3759603 (+) 555 WP_001286216.1 gamma carbonic anhydrase family protein -
  ECE24377A_RS20370 (EcE24377A_3762) yrdB 3759579..3759836 (-) 258 WP_001070563.1 DUF1488 domain-containing protein -
  ECE24377A_RS20375 (EcE24377A_3764) aroE 3759833..3760651 (-) 819 WP_000451211.1 shikimate dehydrogenase -
  ECE24377A_RS20380 (EcE24377A_3765) tsaC 3760656..3761228 (-) 573 WP_001297709.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  ECE24377A_RS20385 (EcE24377A_3766) yrdD 3761233..3761775 (-) 543 WP_001129723.1 type I DNA topoisomerase -
  ECE24377A_RS20390 (EcE24377A_3767) smg 3761804..3762277 (-) 474 WP_000460672.1 DUF494 family protein Smg -
  ECE24377A_RS20395 (EcE24377A_3768) dprA 3762249..3763373 (-) 1125 WP_000228531.1 DNA-protecting protein DprA Machinery gene
  ECE24377A_RS20400 (EcE24377A_3769) def 3763503..3764012 (+) 510 WP_000114984.1 peptide deformylase -
  ECE24377A_RS20405 (EcE24377A_3770) fmt 3764027..3764974 (+) 948 WP_000004432.1 methionyl-tRNA formyltransferase -
  ECE24377A_RS20410 (EcE24377A_3771) rsmB 3765020..3766309 (+) 1290 WP_000744779.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  ECE24377A_RS20415 (EcE24377A_3772) trkA 3766331..3767707 (+) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  ECE24377A_RS20420 (EcE24377A_3774) mscL 3767837..3768247 (+) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40986.98 Da        Isoelectric Point: 6.3122

>NTDB_id=27250 ECE24377A_RS20395 WP_000228531.1 3762249..3763373(-) (dprA) [Escherichia coli O139:H28 str. E24377A]
MVDTEIWLRLMSISSLYGDDMVRIAHWLAKQSQIDAVGLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLMTTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLAASLLEHGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=27250 ECE24377A_RS20395 WP_000228531.1 3762249..3763373(-) (dprA) [Escherichia coli O139:H28 str. E24377A]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGTATCAGCAGCTTGTACGGCGATGATATGGTCCGTATAGCTCACTG
GCTGGCAAAACAGTCGCAAATTGATGCGGTTGGATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGATGACGACAGATTACCCCGGTGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGGTTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCTGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCCCGCCGCCATGCCCGACTGGCTGCCAGTCTGCT
TGAACATGGCGGAGCTCTCGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCCTTGCCAGGTCCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGCAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (WHD_DprA)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZSH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.509

98.663

0.479
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

44.865

98.93

0.444
  dprA Vibrio cholerae strain A1552

44.865

98.93

0.444
  dprA Haemophilus influenzae Rd KW20

45.401

90.107

0.409
  dprA Glaesserella parasuis strain SC1401

44.838

90.642

0.406
  dprA Legionella pneumophila strain ERS1305867

44.545

88.235

0.393

Multiple sequence alignment