Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C1P50_RS20735 Genome accession   NZ_CP026762
Coordinates   3907156..3907671 (+) Length   171 a.a.
NCBI ID   WP_000168307.1    Uniprot ID   -
Organism   Shigella boydii strain NCTC 9850     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3902156..3912671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1P50_RS20715 aphA 3902445..3903158 (+) 714 WP_001317548.1 acid phosphatase AphA -
  C1P50_RS20720 - 3903269..3903685 (+) 417 WP_073714947.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C1P50_RS20725 - 3903689..3904045 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  C1P50_RS20730 uvrA 3904080..3906902 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  C1P50_RS20735 ssb 3907156..3907671 (+) 516 WP_000168307.1 single-stranded DNA-binding protein SSB1 Machinery gene
  C1P50_RS20740 - 3907770..3908051 (-) 282 WP_001295689.1 YjcB family protein -
  C1P50_RS20745 pdeC 3908481..3909215 (+) 735 Protein_3999 c-di-GMP phosphodiesterase PdeC -
  C1P50_RS20750 - 3909272..3909970 (+) 699 Protein_4000 IS1 family transposase -
  C1P50_RS20755 pdeC 3909982..3910845 (+) 864 Protein_4001 c-di-GMP phosphodiesterase PdeC -
  C1P50_RS20760 soxS 3910848..3911171 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  C1P50_RS20765 soxR 3911257..3911721 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18264.25 Da        Isoelectric Point: 5.2358

>NTDB_id=272323 C1P50_RS20735 WP_000168307.1 3907156..3907671(+) (ssb) [Shigella boydii strain NCTC 9850]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNE
PPMDFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=272323 C1P50_RS20735 WP_000168307.1 3907156..3907671(+) (ssb) [Shigella boydii strain NCTC 9850]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCTCAGC
AGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCTCCGGCAGCGCCGTCTAACGAG
CCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.481

100

0.778
  ssb Glaesserella parasuis strain SC1401

58.242

100

0.62
  ssb Neisseria meningitidis MC58

48.588

100

0.503
  ssb Neisseria gonorrhoeae MS11

48.588

100

0.503
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.374

Multiple sequence alignment