Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C4M74_RS09460 Genome accession   NZ_CP026744
Coordinates   1957131..1958342 (-) Length   403 a.a.
NCBI ID   WP_104227615.1    Uniprot ID   -
Organism   Pasteurella multocida strain 161215033201-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1952131..1963342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4M74_RS09430 raiA 1952907..1953224 (-) 318 WP_005722573.1 ribosome-associated translation inhibitor RaiA -
  C4M74_RS09435 - 1953469..1954842 (-) 1374 WP_104884547.1 sodium:alanine symporter family protein -
  C4M74_RS09440 - 1955291..1955560 (-) 270 WP_005722568.1 GNAT family N-acetyltransferase -
  C4M74_RS09445 yacG 1955560..1955763 (-) 204 WP_083004817.1 DNA gyrase inhibitor YacG -
  C4M74_RS09450 coaE 1955774..1956394 (-) 621 WP_104227613.1 dephospho-CoA kinase -
  C4M74_RS09455 - 1956406..1957131 (-) 726 WP_104884548.1 A24 family peptidase -
  C4M74_RS09460 pilC 1957131..1958342 (-) 1212 WP_104227615.1 type II secretion system F family protein Machinery gene
  C4M74_RS09465 pilB 1958342..1959730 (-) 1389 WP_104227616.1 GspE/PulE family protein Machinery gene
  C4M74_RS09470 pilA 1959730..1960164 (-) 435 WP_104227617.1 prepilin peptidase-dependent pilin Machinery gene
  C4M74_RS09475 ampD 1960324..1960890 (+) 567 WP_104227618.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  C4M74_RS09480 rppH 1961476..1962072 (+) 597 WP_083004799.1 RNA pyrophosphohydrolase -
  C4M74_RS09485 - 1962075..1962869 (+) 795 WP_083004796.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 46125.16 Da        Isoelectric Point: 9.8830

>NTDB_id=272125 C4M74_RS09460 WP_104227615.1 1957131..1958342(-) (pilC) [Pasteurella multocida strain 161215033201-1]
MKKLKMFRWKGINRLQQIQKGVIVAESKEIAQQSLLLQGVHQLHLQRNWQLSMQPKYTEICDLLMQLAMLLQASVPLKES
LQLLQRHASNIELTQWLRQLLCSLESGFSFSTALATQDRYLTKQEYQLISVGESTGKLPLVCAQLAKQRQQSLALRRKVQ
KMLFYPMLVLAVTLILTLLLLLFIVPQFAEIYANQPLPAFTVLLLNISTGLRGYAFQLSLLLIFGFIFLMLNVRQRVGLY
RLKNCLLHFIPIFKQIAQHHELIHFCRHLHLMLSSGMPLQQALRTFLPTQKSGIAKHVLTEMRLAEEVQLMLKGIAQGYT
FSEVIGSNLFPEMAQQMLHVGEQTGRLSEMLQYIAESYQQKLEHQLDLLSQLLEPCLMLVIGSIIGVILLGMYLPMFNMG
ALV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=272125 C4M74_RS09460 WP_104227615.1 1957131..1958342(-) (pilC) [Pasteurella multocida strain 161215033201-1]
ATGAAAAAATTAAAAATGTTTCGCTGGAAAGGAATAAATCGATTACAACAAATACAAAAAGGCGTTATTGTGGCGGAAAG
TAAAGAGATAGCACAGCAATCTTTATTACTTCAGGGCGTTCACCAACTGCATTTACAACGAAATTGGCAGCTTTCTATGC
AACCTAAATATACAGAGATTTGTGATCTGTTAATGCAATTAGCGATGCTATTACAAGCTTCGGTTCCCTTGAAGGAAAGT
TTACAGCTATTACAGCGACATGCTAGCAATATTGAGTTAACGCAATGGTTACGTCAGTTACTCTGTTCACTTGAAAGTGG
ATTTTCTTTTTCAACCGCGCTAGCCACACAAGATCGTTACTTAACAAAACAGGAATACCAATTAATTTCTGTTGGTGAAT
CGACAGGGAAACTACCACTTGTTTGTGCACAATTAGCGAAACAACGTCAACAATCACTGGCGTTACGGCGCAAAGTTCAG
AAAATGTTGTTTTATCCAATGTTAGTGCTTGCTGTGACATTGATCTTAACATTGTTGTTACTGCTATTTATTGTGCCACA
GTTTGCTGAGATTTATGCAAATCAACCTTTACCTGCGTTTACTGTGTTGTTATTGAATATATCGACAGGGTTACGTGGTT
ATGCTTTTCAATTGAGTCTCCTATTAATTTTCGGCTTCATCTTTTTGATGTTAAATGTGAGACAGCGAGTTGGACTATAT
CGATTAAAAAATTGTCTGCTTCATTTCATTCCCATCTTTAAGCAAATTGCGCAACATCACGAGCTTATTCATTTTTGTCG
TCATTTACATCTTATGCTCAGCTCGGGCATGCCTTTACAACAGGCATTGCGGACTTTTTTACCTACACAGAAAAGTGGTA
TAGCAAAACACGTGCTTACCGAGATGCGACTTGCTGAGGAAGTCCAGTTAATGTTAAAGGGAATTGCTCAAGGTTATACG
TTTTCTGAAGTTATCGGCTCCAACTTATTTCCGGAGATGGCACAACAGATGTTACATGTTGGTGAACAGACAGGGCGATT
AAGCGAAATGTTGCAGTATATAGCAGAAAGTTATCAACAAAAGTTAGAGCACCAACTTGATTTACTTTCACAATTATTGG
AACCCTGTTTAATGTTAGTGATTGGTTCGATTATTGGCGTCATTTTATTGGGCATGTATCTACCTATGTTTAATATGGGG
GCATTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(265-395)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

48.395

100

0.486
  pilC Haemophilus influenzae 86-028NP

48.148

100

0.484
  pilC Glaesserella parasuis strain SC1401

39.506

100

0.397

Multiple sequence alignment