Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C2I28_RS08020 Genome accession   NZ_CP026736
Coordinates   1552717..1553217 (-) Length   166 a.a.
NCBI ID   WP_013059914.1    Uniprot ID   A0A0B6A5N1
Organism   Priestia megaterium strain YC4-R4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1547717..1558217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I28_RS08000 (C2I28_07910) rplI 1548872..1549321 (-) 450 WP_013059910.1 50S ribosomal protein L9 -
  C2I28_RS08005 (C2I28_07915) - 1549318..1551291 (-) 1974 WP_025752414.1 DHH family phosphoesterase -
  C2I28_RS08010 (C2I28_07920) - 1551328..1552272 (-) 945 WP_033580875.1 YybS family protein -
  C2I28_RS08015 (C2I28_07925) rpsR 1552411..1552650 (-) 240 WP_013059913.1 30S ribosomal protein S18 -
  C2I28_RS08020 (C2I28_07930) ssbA 1552717..1553217 (-) 501 WP_013059914.1 single-stranded DNA-binding protein Machinery gene
  C2I28_RS08025 (C2I28_07935) rpsF 1553265..1553552 (-) 288 WP_013059915.1 30S ribosomal protein S6 -
  C2I28_RS08030 (C2I28_07940) ychF 1553742..1554842 (-) 1101 WP_028411917.1 redox-regulated ATPase YchF -
  C2I28_RS08035 (C2I28_07945) - 1555013..1555210 (-) 198 WP_013059917.1 DUF951 domain-containing protein -
  C2I28_RS08040 (C2I28_07950) - 1555225..1556118 (-) 894 WP_028409761.1 mechanosensitive ion channel family protein -
  C2I28_RS08045 (C2I28_07955) - 1556186..1557199 (-) 1014 WP_028411916.1 membrane protein -
  C2I28_RS08050 (C2I28_07960) yyaC 1557286..1557906 (+) 621 WP_028411915.1 spore protease YyaC -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18132.76 Da        Isoelectric Point: 4.6529

>NTDB_id=272055 C2I28_RS08020 WP_013059914.1 1552717..1553217(-) (ssbA) [Priestia megaterium strain YC4-R4]
MMNRVILVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENAANFLKKGSLAGVDGRLQSR
SYEGQDGRRVYVTEVVAESVQFLEPKSGGGDTQRSNFANTGGSGQGSPFGDNQNRNSGNQGYTRVDDDPFANNGETIDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=272055 C2I28_RS08020 WP_013059914.1 1552717..1553217(-) (ssbA) [Priestia megaterium strain YC4-R4]
ATGATGAATCGCGTAATTCTCGTAGGACGCTTAACCAAAGATCCTGAATTACGTTATACCCCGAGTGGAGCAGCGGTTGC
AACATTCACTTTAGCGGTAAACCGCACATTTACAAATCAGCAAGGTGAACGTGAAGCTGACTTCATCAACTGTGTTGTAT
GGCGTCGTCAGGCTGAAAATGCAGCCAATTTCCTTAAAAAAGGAAGTTTAGCTGGTGTTGATGGTCGACTACAATCTCGC
AGTTACGAAGGACAAGACGGTCGTCGTGTATACGTAACGGAAGTTGTAGCGGAAAGTGTGCAATTTTTAGAGCCGAAAAG
TGGCGGTGGGGATACGCAACGCAGTAACTTTGCTAACACTGGAGGATCTGGACAAGGCTCTCCATTTGGAGATAATCAGA
ACCGTAACTCAGGTAATCAAGGTTATACTCGCGTTGATGATGATCCATTTGCAAATAATGGCGAGACAATTGACATTTCT
GATGACGATTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B6A5N1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.765
  ssb Latilactobacillus sakei subsp. sakei 23K

58.721

100

0.608
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

63.855

0.404
  ssb Vibrio cholerae strain A1552

33.889

100

0.367
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.367

Multiple sequence alignment