Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AM351_RS01395 Genome accession   NZ_CP026709
Coordinates   296599..298119 (-) Length   506 a.a.
NCBI ID   WP_060816121.1    Uniprot ID   A0AAW7EWE0
Organism   Citrobacter koseri strain AR_0024     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 291599..303119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM351_RS01385 (AM351_01385) hdfR 295283..296128 (-) 846 WP_012131114.1 HTH-type transcriptional regulator HdfR -
  AM351_RS01390 (AM351_01390) maoP 296235..296573 (+) 339 WP_012131115.1 macrodomain Ori organization protein MaoP -
  AM351_RS01395 (AM351_01395) comM 296599..298119 (-) 1521 WP_060816121.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AM351_RS01405 (AM351_01405) ilvL 298471..298569 (+) 99 WP_001311244.1 ilv operon leader peptide -
  AM351_RS24820 ilvX 298657..298707 (+) 51 WP_202401504.1 peptide IlvX -
  AM351_RS01410 (AM351_01410) ilvG 298710..300356 (+) 1647 WP_012131118.1 acetolactate synthase 2 catalytic subunit -
  AM351_RS01415 (AM351_01415) ilvM 300353..300616 (+) 264 WP_012131119.1 acetolactate synthase 2 small subunit -
  AM351_RS01420 (AM351_01420) ilvE 300634..301563 (+) 930 WP_012131120.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55000.06 Da        Isoelectric Point: 7.6395

>NTDB_id=271894 AM351_RS01395 WP_060816121.1 296599..298119(-) (comM) [Citrobacter koseri strain AR_0024]
MSLSIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTTNKLNEYELVGELALTGALRGVPGAISSATEAIRAGRHIIVAKENTAEVGLISGEGCLIADHL
QTVCAFLEGKRDLEKPVSTDSDACLLHDDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPSLSDK
EALESAAILSLVNADTVQRQWKRRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCSPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGILSQAAVKG
EDSATVKVRVISARKRQYERQGKLNAHLDSQGIRKYCSLHSDDAHWLEETLIHLGLSIRAWQRLLKVARTIADLEQTENI
TRLHLQEAVGYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=271894 AM351_RS01395 WP_060816121.1 296599..298119(-) (comM) [Citrobacter koseri strain AR_0024]
ATGTCACTGTCGATTGTTCACACACGCGCCGCACTTGGCGTTAATGCGCCGCCAATAACCATCGAGGTGCATATCAGTAA
TGGCCTGCCGGGTTTAACAATGGTTGGGCTACCTGAAACGACGGTAAAGGAGGCCCGGGATCGGGTTCGCAGCGCAATCA
TCAATAGCGGGTATGAATTTCCGGCGAAGAAAATCACCATTAATCTGGCCCCGGCAGATTTACCCAAAGAGGGCGGAAGA
TATGATTTACCTATCGCAATTGCGCTTCTGGCGGCGTCAGAGCAACTTACAACAAATAAGCTTAATGAATATGAACTGGT
AGGCGAACTGGCCCTTACAGGTGCGTTACGTGGCGTTCCAGGCGCGATATCCAGTGCAACCGAGGCGATTCGGGCAGGCA
GACATATCATTGTTGCAAAAGAGAATACGGCGGAAGTTGGGCTAATCAGCGGGGAGGGATGCCTGATTGCAGATCATCTG
CAAACGGTATGCGCATTTCTGGAAGGGAAACGTGATCTTGAGAAACCAGTCTCTACCGATTCTGACGCCTGTTTACTGCA
TGACGATCTCAGTGATGTTATCGGTCAGGAACAGGGGAAACGAGGCCTGGAAATCACGGCCGCAGGAGGGCACAACCTGC
TGCTGATAGGCCCACCAGGTACGGGAAAAACCATGCTGGCCAGCCGCATTAATGGGCTACTGCCATCATTAAGCGACAAA
GAAGCGCTGGAAAGTGCGGCGATTCTCAGCCTGGTGAACGCCGATACGGTACAAAGGCAGTGGAAACGGCGTCCTTTCCG
CTCGCCTCATCACAGCGCGTCATTAACGGCAATGGTAGGGGGAGGTTCAATACCCGCGCCAGGAGAAATATCGCTGGCGC
ACAACGGTATTCTGTTTCTGGATGAACTGCCTGAGTTTGAGCGACGCACGCTGGATGCGCTGCGTGAACCTATTGAGTCT
GGTCAGATACACCTTTCGCGCACCCGGGCAAAGATCACCTATCCTGCGCGCTTCCAACTGGTTGCAGCGATGAATCCCAG
CCCGACCGGTCACTATCAGGGGAACCATAATCGCTGTAGCCCGGAACAGACGTTGCGCTACCTCAGCCGTTTATCCGGCC
CCTTTCTCGATCGATTCGATCTCTCGCTCGAAATTCCCCTGCCACCGCCCGGTATACTCAGTCAGGCAGCGGTTAAAGGC
GAGGACAGCGCTACAGTGAAAGTACGGGTGATATCCGCACGGAAACGCCAGTACGAACGACAGGGGAAGCTAAACGCCCA
TCTGGACAGCCAGGGTATACGAAAGTACTGTTCTCTACACAGTGATGATGCGCACTGGCTGGAGGAGACGCTGATACATC
TGGGATTGTCTATACGAGCCTGGCAGCGCTTACTGAAGGTTGCCCGTACCATTGCCGATCTGGAACAAACGGAGAATATT
ACGCGCCTACATTTGCAGGAGGCTGTGGGCTATCGGGCAATAGACAGGCTACTGATTCATTTACAAAAACTACTGACGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59.562

99.209

0.591
  comM Haemophilus influenzae Rd KW20

58.398

100

0.591
  comM Glaesserella parasuis strain SC1401

58.35

100

0.587
  comM Vibrio campbellii strain DS40M4

58.566

99.209

0.581
  comM Legionella pneumophila str. Paris

47.2

98.814

0.466
  comM Legionella pneumophila strain ERS1305867

47.2

98.814

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.334

99.407

0.441

Multiple sequence alignment