Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SPUTW3181_RS19615 Genome accession   NC_008750
Coordinates   4328970..4330499 (+) Length   509 a.a.
NCBI ID   WP_011791013.1    Uniprot ID   A0A6N3J9I2
Organism   Shewanella sp. W3-18-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4323970..4335499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPUTW3181_RS19600 (Sputw3181_3776) - 4324128..4326542 (+) 2415 WP_011791010.1 TonB-dependent receptor domain-containing protein -
  SPUTW3181_RS19605 (Sputw3181_3777) - 4326904..4328025 (-) 1122 WP_011791011.1 DUF1963 domain-containing protein -
  SPUTW3181_RS19610 (Sputw3181_3778) sodC 4328289..4328810 (+) 522 WP_011791012.1 superoxide dismutase family protein -
  SPUTW3181_RS19615 (Sputw3181_3779) comM 4328970..4330499 (+) 1530 WP_011791013.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SPUTW3181_RS19620 (Sputw3181_3780) - 4330601..4331497 (+) 897 WP_011791014.1 acyltransferase -
  SPUTW3181_RS19625 (Sputw3181_3781) - 4331511..4332455 (+) 945 WP_011791015.1 acyltransferase -
  SPUTW3181_RS19630 (Sputw3181_3782) - 4332452..4332958 (-) 507 WP_011791016.1 DUF523 domain-containing protein -
  SPUTW3181_RS19635 (Sputw3181_3783) - 4333259..4334026 (+) 768 WP_011791017.1 GntR family transcriptional regulator -
  SPUTW3181_RS19640 (Sputw3181_3784) prpB 4334079..4334957 (+) 879 WP_006084450.1 methylisocitrate lyase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55450.81 Da        Isoelectric Point: 8.0790

>NTDB_id=27186 SPUTW3181_RS19615 WP_011791013.1 4328970..4330499(+) (comM) [Shewanella sp. W3-18-1]
MAIACVNTRASCGVEAPKVTVEVHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAVGILAASEQIPANSLKNLEFVGELALSGQIRYCQGLLPAIIAAKRQDNTLILPLENRHDAELVGYQKVFFGSHL
QSLAAFLQGQAPLPELDTHLEWVSEEQSYDSSQCLSDVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRMMALLP
ALSYEEALEVAAIHSVAGLDIKPQDFLKRPFRAPHHTSSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLR
EPMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDIDANNRATPDQVQRYLARLSGPFLDRFDLTIEVPKLPAGTLTQA
MAPSETSQDVAKRVRRARDIQLARSGVLNSELTGKQLKLFSGLTNADLIFLEQSVVKLGLSVRSFHRIQRVARTIADLEQ
SPNTERRHLAQALGYRAMDRLLARLSQQY

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=27186 SPUTW3181_RS19615 WP_011791013.1 4328970..4330499(+) (comM) [Shewanella sp. W3-18-1]
ATGGCAATTGCCTGCGTTAACACTCGAGCCAGTTGCGGGGTTGAAGCCCCAAAAGTCACGGTTGAAGTACATCTTAGTAA
TGGGTTACCTGCATTTAATCTAGTGGGATTACCTGAAGCCTCGGTAAAGGAAGCCCGTGAACGAGTACGTAGCGCACTGA
TCAACGCAGGTTTTGAATTCCCAATGCGCAGAATTACTGTCAATCTCGCGCCGGCAGATTTGCCGAAACAAGGGGGGCGC
TACGATTTACCTATCGCTGTGGGCATACTCGCGGCATCCGAACAAATCCCAGCTAACAGTTTAAAAAATTTAGAATTTGT
GGGTGAACTGGCGCTTTCTGGACAGATTCGTTATTGCCAAGGGCTGCTACCTGCAATTATTGCAGCAAAACGCCAAGACA
ATACTTTAATTTTGCCATTGGAAAATCGTCACGATGCCGAGTTAGTTGGCTATCAAAAGGTATTTTTTGGATCGCACTTA
CAAAGTCTCGCGGCATTTTTACAAGGTCAAGCACCACTACCGGAACTTGATACTCATCTTGAATGGGTAAGCGAAGAACA
ATCCTATGATTCAAGCCAATGCTTAAGCGATGTGATAGGACAATATCAAGCCAAACAAGCACTGGAAATTGCGGCGGCAG
GTAATCATAACCTTTTGATGCTGGGCCCGCCCGGAACTGGAAAAACCATGCTGGCCAGCCGCATGATGGCGCTACTCCCT
GCCTTAAGTTATGAAGAAGCATTAGAAGTTGCCGCTATTCACTCCGTTGCAGGACTCGACATCAAGCCACAAGATTTTTT
AAAACGCCCCTTTAGAGCGCCACACCACACAAGTTCATCAATATCCCTCGTGGGTGGCGGAAGTATTCCAAAACCCGGTG
AAATCTCCCTCGCACACCGTGGCGTCTTATTTTTAGATGAAGTAGCTGAATTTCCACGTAAAGTGCTCGACTGCCTACGT
GAGCCTATGGAAACAGGCGAAGTAGTCATTTCCCGCGCCGCCGCTAAACTCACGTTTTTAAGCCGTTTTCAATTAATCGC
CGCCATGAATCCTAGCCCTAGCGGTGATATTGATGCAAATAACCGCGCCACTCCAGATCAAGTACAGCGGTATCTTGCAA
GATTGTCGGGCCCATTTCTCGATAGATTTGATCTCACGATTGAAGTGCCAAAACTACCCGCAGGCACACTCACCCAAGCC
ATGGCGCCGAGCGAAACTAGCCAAGATGTCGCGAAACGAGTTAGGCGCGCAAGGGATATTCAACTGGCTCGCTCAGGAGT
GCTCAACAGTGAACTTACGGGTAAACAGCTTAAACTTTTCAGTGGTCTAACTAATGCAGACCTTATCTTTTTAGAGCAGA
GCGTCGTCAAACTTGGACTTTCTGTGCGTAGCTTTCATCGTATTCAACGAGTCGCCCGCACGATTGCCGATCTAGAGCAG
TCACCCAATACTGAAAGACGTCACTTGGCTCAAGCATTAGGATATCGCGCTATGGATAGGCTGCTTGCGCGTTTATCTCA
GCAATATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(195-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N3J9I2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.778

100

0.568
  comM Vibrio campbellii strain DS40M4

56.385

100

0.564
  comM Haemophilus influenzae Rd KW20

56.016

99.607

0.558
  comM Glaesserella parasuis strain SC1401

55.227

99.607

0.55
  comM Legionella pneumophila str. Paris

47.937

100

0.479
  comM Legionella pneumophila strain ERS1305867

47.937

100

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.574

97.839

0.426

Multiple sequence alignment