Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | C4E16_RS06840 | Genome accession | NZ_CP026647 |
| Coordinates | 1521606..1521917 (-) | Length | 103 a.a. |
| NCBI ID | WP_001166105.1 | Uniprot ID | Q9KQT1 |
| Organism | Vibrio cholerae O1 biovar El Tor strain HC1037 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1516606..1526917
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4E16_RS06815 (C4E16_06815) | lapB | 1516800..1517969 (-) | 1170 | WP_000889971.1 | lipopolysaccharide assembly protein LapB | - |
| C4E16_RS06820 (C4E16_06820) | - | 1517981..1518262 (-) | 282 | WP_000691492.1 | LapA family protein | - |
| C4E16_RS06825 (C4E16_06825) | ihfB | 1518401..1518679 (-) | 279 | WP_000167341.1 | integration host factor subunit beta | - |
| C4E16_RS06830 (C4E16_06830) | rpsA | 1518967..1520637 (-) | 1671 | WP_000140318.1 | 30S ribosomal protein S1 | - |
| C4E16_RS06835 (C4E16_06835) | cmk | 1520746..1521423 (-) | 678 | WP_000094752.1 | (d)CMP kinase | - |
| C4E16_RS06840 (C4E16_06840) | comEA | 1521606..1521917 (-) | 312 | WP_001166105.1 | ComEA family DNA-binding protein | Machinery gene |
| C4E16_RS06845 (C4E16_06845) | ppiD | 1522052..1523911 (-) | 1860 | WP_000969331.1 | peptidylprolyl isomerase | - |
| C4E16_RS06850 (C4E16_06850) | - | 1524064..1524336 (-) | 273 | WP_001044516.1 | HU family DNA-binding protein | - |
| C4E16_RS06855 (C4E16_06855) | lon | 1524520..1526880 (-) | 2361 | WP_001047611.1 | endopeptidase La | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 10966.78 Da Isoelectric Point: 5.0506
>NTDB_id=271180 C4E16_RS06840 WP_001166105.1 1521606..1521917(-) (comEA) [Vibrio cholerae O1 biovar El Tor strain HC1037]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
Nucleotide
Download Length: 312 bp
>NTDB_id=271180 C4E16_RS06840 WP_001166105.1 1521606..1521917(-) (comEA) [Vibrio cholerae O1 biovar El Tor strain HC1037]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAATATTAATACCGCTTCTGCAGAAGAGCTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
100 |
100 |
1 |
| comEA | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
62.766 |
91.262 |
0.573 |
| comEA | Vibrio campbellii strain DS40M4 |
58.333 |
93.204 |
0.544 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
40.541 |
100 |
0.437 |