Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C3Y93_RS10800 Genome accession   NZ_CP026616
Coordinates   2245765..2247252 (-) Length   495 a.a.
NCBI ID   WP_096902240.1    Uniprot ID   A0A2A5PGC2
Organism   Acinetobacter sp. SWBY1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2240765..2252252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3Y93_RS10780 (C3Y93_10780) - 2241229..2241627 (+) 399 WP_104852906.1 MAPEG family protein -
  C3Y93_RS10785 (C3Y93_10785) ppa 2241752..2242288 (+) 537 WP_104852907.1 inorganic diphosphatase -
  C3Y93_RS10790 (C3Y93_10790) - 2242386..2243729 (-) 1344 WP_104852908.1 OprD family outer membrane porin -
  C3Y93_RS10795 (C3Y93_10795) - 2244858..2245610 (+) 753 WP_026438393.1 TorF family putative porin -
  C3Y93_RS10800 (C3Y93_10800) comM 2245765..2247252 (-) 1488 WP_096902240.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C3Y93_RS10805 (C3Y93_10805) - 2247325..2247552 (-) 228 WP_096902239.1 accessory factor UbiK family protein -
  C3Y93_RS10810 (C3Y93_10810) glnK 2247829..2248167 (+) 339 WP_004650081.1 P-II family nitrogen regulator -
  C3Y93_RS10815 (C3Y93_10815) - 2248231..2249640 (+) 1410 WP_104852909.1 ammonium transporter -
  C3Y93_RS10820 (C3Y93_10820) nrdR 2249780..2250238 (+) 459 WP_096902237.1 transcriptional regulator NrdR -
  C3Y93_RS10825 (C3Y93_10825) ribD 2250278..2251381 (+) 1104 WP_104853277.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54035.88 Da        Isoelectric Point: 7.2192

>NTDB_id=270916 C3Y93_RS10800 WP_096902240.1 2245765..2247252(-) (comM) [Acinetobacter sp. SWBY1]
MSFAKVYTRGLLGLHAPAIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLAIALGILIASGQLPEQSTEGLEFIGELALDGQLRPTTGTLSIAIACQQAQHCLVLPEQNAQEAAQLPDFEVFAATHL
KQVCEHLAQSQPLDKVTATAQPQLSHSAFDLVDVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLSSILPPLNM
QENLEVASIYSVANSPHTFGQRPFRAPHHTASAVALVGGGSYPKPGEITLAHLGVLFLDELPEFDKKVLEVLRQPLESKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDVRCQCSAESIKRYQNRISGPLLDRIDLHIDVPPLQAHELQDTRPVE
NSETVRSRVIQAYTRQLQRQECLNMALSPKQLELFAHLDNTAQNILAIAQQRLNLSARAYHRVLRVARTIADLAQSEQIQ
SPHLSEALSYRAHEA

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=270916 C3Y93_RS10800 WP_096902240.1 2245765..2247252(-) (comM) [Acinetobacter sp. SWBY1]
ATGTCTTTTGCCAAAGTGTATACGCGGGGGCTGCTCGGCTTGCACGCCCCTGCAATTGAAGTTGAAGTCCATCTGAGTCA
AGGTTTACCTTCTTTAACCATTGTCGGTCTAGCCGAAGCTGCCGTGCGTGAAAGTAAAGATCGGGTACGCTCTGCCATTA
TTAATAGTGGTTTTCAATTTCCGACCAAACGTCTGACCATTAATTTAGCACCTGCCGACTTGCCCAAAGATGGTTCGCGT
TTGGACTTAGCCATTGCTTTAGGCATTTTAATTGCTTCGGGACAGTTGCCCGAACAAAGCACTGAAGGTTTAGAGTTTAT
TGGAGAATTGGCTTTAGATGGTCAATTGCGCCCCACCACAGGCACACTCAGTATTGCGATTGCCTGCCAACAGGCACAGC
ATTGTTTGGTTTTACCTGAACAAAATGCACAAGAAGCTGCTCAATTGCCTGACTTTGAAGTCTTTGCCGCCACACATTTA
AAACAAGTTTGCGAACATTTGGCACAAAGCCAGCCTTTAGATAAAGTCACCGCGACTGCCCAACCACAGTTATCACATTC
CGCCTTTGATTTAGTCGATGTTAAAGGACAGTTGCGCCCACGACGTGCTTTGGAAATTGCGGCTGCAGGTGGACATTCAT
TGCTATTCAAAGGCCCACCTGGTACAGGCAAAACCTTATTGGCATCTAGGCTTTCCAGTATTTTACCGCCATTGAATATG
CAGGAAAATTTAGAGGTTGCCAGTATCTATTCAGTGGCCAATAGCCCGCATACGTTTGGACAGCGTCCTTTTCGCGCCCC
ACATCATACCGCTTCTGCTGTGGCCTTGGTCGGTGGAGGCTCATATCCCAAACCCGGTGAAATTACCTTGGCGCATTTAG
GCGTTTTATTTTTAGATGAATTGCCTGAATTTGATAAAAAAGTGTTAGAAGTGCTGCGCCAACCTTTAGAGTCCAAAGAA
ATTGTGATTTCCCGCGCCTCTCGGCAAATTACCTTTCCAGCCAACTTTCAACTGATTGCTGCCATGAATCCCTGCCCTTG
TGGTTATGCTTTTAATCAAGATGTGCGCTGTCAGTGTTCTGCAGAAAGTATTAAACGCTATCAAAACCGTATTTCAGGAC
CGTTGTTGGATCGTATCGACTTACACATTGATGTACCACCTCTGCAAGCACATGAATTACAGGATACCCGACCAGTGGAA
AATTCTGAAACCGTGCGAAGCCGTGTCATTCAAGCATATACACGACAATTGCAACGCCAAGAGTGTTTAAACATGGCGCT
CAGTCCCAAACAATTAGAACTATTTGCACACTTAGATAATACTGCCCAAAATATTTTAGCCATTGCGCAGCAGCGTTTGA
ACTTATCGGCGCGTGCGTATCATCGGGTGTTACGAGTGGCACGCACCATTGCAGATTTAGCCCAAAGTGAACAGATTCAA
AGTCCACATTTGAGTGAAGCACTGTCTTATCGTGCCCATGAAGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A5PGC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.402

100

0.507
  comM Haemophilus influenzae Rd KW20

50.2

100

0.507
  comM Glaesserella parasuis strain SC1401

49.505

100

0.505
  comM Vibrio campbellii strain DS40M4

49.598

100

0.499
  comM Legionella pneumophila str. Paris

49.395

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.395

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.918

100

0.477

Multiple sequence alignment