Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SAMA_RS17130 Genome accession   NC_008700
Coordinates   3907091..3908617 (+) Length   508 a.a.
NCBI ID   WP_011761395.1    Uniprot ID   A1SAT4
Organism   Shewanella amazonensis SB2B     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3902091..3913617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAMA_RS17115 (Sama_3285) - 3903099..3903902 (+) 804 WP_011761392.1 ABC transporter substrate-binding protein -
  SAMA_RS17120 (Sama_3286) - 3903986..3905815 (-) 1830 WP_157608360.1 sensor domain-containing diguanylate cyclase -
  SAMA_RS17125 (Sama_3287) - 3905858..3906871 (-) 1014 WP_011761394.1 ABC transporter substrate-binding protein -
  SAMA_RS17130 (Sama_3288) comM 3907091..3908617 (+) 1527 WP_011761395.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SAMA_RS17135 (Sama_3289) - 3908878..3909738 (-) 861 WP_011761396.1 ABC transporter substrate-binding protein -
  SAMA_RS17140 (Sama_3290) - 3909924..3910844 (+) 921 WP_011761397.1 acyltransferase -
  SAMA_RS17145 (Sama_3291) - 3910837..3911778 (+) 942 WP_011761398.1 acyltransferase -
  SAMA_RS17150 - 3911976..3912557 (+) 582 WP_041409932.1 hypothetical protein -
  SAMA_RS17155 (Sama_3292) - 3912502..3912981 (-) 480 WP_011761399.1 DUF523 domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54524.85 Da        Isoelectric Point: 8.3241

>NTDB_id=27076 SAMA_RS17130 WP_011761395.1 3907091..3908617(+) (comM) [Shewanella amazonensis SB2B]
MAIACVATRASLGVEAPAVTVEVHLANGLPAFNLVGLPEASVKEARERVRSALVNAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAIGILAASGQIPLTSLKDREFVGELALSGDIRHCPGLLPVIVAARRDGRELILPLANRADAELVDYPAIRLCSQL
VHLVAFLHGQQSLPGLEQGAEWLDDTQANVLCLSDVVGQYQAKQALEIAAAGSHNLLMLGLPGCGKTMLASRIMGLLPPL
GYDEALEVAALHSVAGLNIKPGEFHRRPFRSPHHTCSAISLVGGGSVPKPGEISLAHRGVLFLDELAEFPRKVLDCLREP
METGEVVISRAAAKLTFASRFQLIAAMNPSPCGSMGPGSRSSPDQINRYLGRLSGPFLDRFDLSIEVPPLPPGTLTQEGN
NGETSQSVAQRVHRARERQLARAGVLNAELSGKALKNAGFSSADLSFLEQSVNRLGLSVRSFHRLQRVARTIADLENSHM
VERRHIAQALGYRAMDRLLANLGQQLGR

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=27076 SAMA_RS17130 WP_011761395.1 3907091..3908617(+) (comM) [Shewanella amazonensis SB2B]
ATGGCCATTGCCTGTGTCGCCACCCGAGCAAGCCTGGGGGTTGAAGCCCCGGCGGTTACCGTTGAAGTGCATCTGGCCAA
TGGCCTGCCCGCCTTTAATCTGGTTGGCCTGCCCGAGGCCTCTGTCAAAGAGGCCAGAGAACGGGTACGCAGCGCCCTGG
TGAACGCCGGGTTCGAGTTCCCCATGCGCCGTATCACAGTGAATCTCGCCCCTGCCGATCTGCCCAAGCAGGGAGGCCGT
TACGATCTTCCCATCGCCATCGGCATTCTCGCCGCCTCCGGTCAAATCCCCCTCACCAGCCTGAAAGACCGCGAATTCGT
TGGCGAGCTGGCCCTGTCCGGTGATATTCGCCATTGCCCGGGCCTGTTGCCCGTTATTGTGGCGGCTCGCCGCGATGGAC
GCGAACTCATATTACCGCTGGCGAACCGCGCCGATGCTGAACTGGTGGATTATCCCGCCATTCGCCTGTGCAGCCAGTTG
GTGCATCTGGTGGCCTTCCTTCACGGCCAGCAGTCCCTGCCGGGGCTGGAGCAAGGCGCAGAATGGCTCGATGATACACA
GGCCAATGTGCTATGCCTGAGTGACGTTGTAGGTCAGTATCAAGCCAAGCAGGCATTGGAAATCGCCGCAGCAGGCTCGC
ACAATCTCTTGATGCTCGGTTTGCCCGGCTGCGGTAAAACCATGCTCGCAAGCCGCATCATGGGGCTGCTCCCACCACTT
GGCTATGATGAAGCCCTCGAAGTTGCTGCACTGCACTCAGTGGCAGGTCTCAATATCAAACCCGGTGAGTTCCATCGCCG
CCCTTTCAGGTCGCCACACCACACCTGCTCAGCCATTTCCCTGGTTGGGGGTGGCAGTGTGCCCAAGCCCGGCGAAATCT
CACTCGCCCACCGGGGCGTGTTATTTCTCGATGAGCTGGCAGAATTCCCCCGCAAGGTGCTCGACTGTTTGCGCGAACCC
ATGGAAACCGGCGAAGTGGTGATTTCCCGGGCTGCCGCAAAGCTTACTTTCGCCAGCCGATTTCAATTAATTGCCGCCAT
GAATCCCAGCCCCTGCGGCAGCATGGGACCAGGCAGCCGCTCAAGCCCTGATCAGATAAACCGCTACCTCGGCAGGCTAT
CCGGCCCTTTTCTTGACCGCTTCGATTTGTCCATCGAGGTGCCCCCTCTGCCACCGGGCACCCTGACTCAGGAAGGCAAT
AATGGTGAAACCAGCCAAAGCGTCGCCCAGCGTGTTCACCGCGCCAGGGAAAGGCAGCTTGCCCGGGCGGGAGTGCTGAA
TGCCGAACTCTCGGGCAAGGCACTGAAAAACGCTGGGTTTAGCAGCGCAGATCTCAGCTTTCTTGAACAGAGTGTCAATC
GCCTCGGGCTGTCGGTGCGCAGCTTTCATCGCCTGCAGCGGGTCGCCCGCACTATCGCAGATTTGGAAAACAGCCACATG
GTAGAGAGGCGCCATATCGCACAGGCGCTGGGTTACAGGGCCATGGACAGGCTACTTGCCAATCTTGGGCAGCAACTTGG
GCGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1SAT4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.929

99.606

0.557
  comM Vibrio cholerae strain A1552

54.776

100

0.553
  comM Vibrio campbellii strain DS40M4

55.03

99.803

0.549
  comM Glaesserella parasuis strain SC1401

54.545

99.606

0.543
  comM Legionella pneumophila str. Paris

47.59

98.031

0.467
  comM Legionella pneumophila strain ERS1305867

47.59

98.031

0.467
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.742

97.638

0.417

Multiple sequence alignment