Detailed information NTG0270263

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BKM03_RS05485
• Genome accession: NZ_CP026562
• Coordinates: 1060991..1061863 (-)
• Length: 290 a.a.
• NCBI ID: WP_005736087.1
• Uniprot ID: -
• Organism: Pseudomonas avellanae strain R2leaf
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1055991..1066863

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BKM03_RS05450 (BKM03_05450)	-	1056702..1058000 (-)	1299	WP_005736092.1	NAD(P)/FAD-dependent oxidoreductase	-
BKM03_RS05460 (BKM03_05460)	-	1058217..1058750 (-)	534	WP_005736091.1	MOSC domain-containing protein	-
BKM03_RS05465 (BKM03_05465)	-	1058747..1059376 (-)	630	WP_005736090.1	DUF1780 domain-containing protein	-
BKM03_RS05470 (BKM03_05470)	-	1059573..1059899 (+)	327	WP_005736089.1	hypothetical protein	-
BKM03_RS05475 (BKM03_05475)	yacG	1060165..1060374 (-)	210	WP_003381207.1	DNA gyrase inhibitor YacG	-
BKM03_RS05480 (BKM03_05480)	coaE	1060371..1060994 (-)	624	WP_005736088.1	dephospho-CoA kinase	-
BKM03_RS05485 (BKM03_05485)	pilD	1060991..1061863 (-)	873	WP_005736087.1	A24 family peptidase	Machinery gene
BKM03_RS05490 (BKM03_05490)	pilC	1061865..1063082 (-)	1218	WP_005736085.1	type II secretion system F family protein	Machinery gene
BKM03_RS05495 (BKM03_05495)	pilB	1063085..1064779 (-)	1695	WP_005736083.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BKM03_RS05500 (BKM03_05500)	pilA2	1065006..1065434 (+)	429	WP_005736082.1	pilin	Machinery gene
BKM03_RS05505 (BKM03_05505)	-	1065597..1065962 (-)	366	WP_005736080.1	helix-turn-helix domain-containing protein	-
BKM03_RS05510 (BKM03_05510)	gstA	1066120..1066740 (+)	621	WP_005736078.1	glutathione transferase GstA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31975.21 Da
• Isoelectric Point: 8.1603

>NTDB_id=270263 BKM03_RS05485 WP_005736087.1 1060991..1061863(-) (pilD) [Pseudomonas avellanae strain R2leaf]
MPLLDLLASSPLAFVTTCCLLGLIVGSFLNVVVYRLPKMMERDWKAQSREMLGLPAEPDQPVFNLILPHSSCPHCAHKIR
PWENLPIISYLLLRGKCSHCKAAISKRYPLVELTCAVLSAYVAWHFGFGWQVAAILVLSWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIVNAFGLFTSLSDALWGAVAGYLTLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=270263 BKM03_RS05485 WP_005736087.1 1060991..1061863(-) (pilD) [Pseudomonas avellanae strain R2leaf]
ATGCCCCTCCTCGACCTCCTGGCCAGCTCTCCCCTGGCCTTCGTCACCACCTGCTGCCTACTCGGCCTCATCGTCGGAAG
CTTCCTCAACGTAGTCGTCTACCGCCTCCCGAAAATGATGGAGCGCGACTGGAAAGCCCAATCACGGGAAATGCTCGGCC
TCCCTGCCGAACCGGACCAACCCGTCTTCAACCTGATCCTGCCGCACTCAAGCTGCCCGCACTGCGCGCACAAGATCCGC
CCATGGGAAAATCTGCCGATCATCAGTTACCTGTTGCTGCGCGGTAAATGCTCGCACTGCAAAGCCGCCATCAGCAAGCG
CTACCCATTGGTAGAGCTGACCTGCGCAGTGTTATCGGCCTACGTCGCCTGGCACTTCGGCTTTGGCTGGCAGGTAGCTG
CGATACTGGTGTTGAGTTGGGGTTTGCTGGCGATGAGTCTGATCGATGCCGATCATCAGCTGTTGCCTGACTCTCTGGTA
CTTCCACTGCTGTGGCTGGGCCTGATCGTTAACGCCTTTGGGCTGTTCACCTCGCTGAGCGATGCGCTGTGGGGTGCGGT
GGCCGGTTATCTGACGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACGGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAATTGCTGGCCATGCTTGGCGCGTGGGGTGGCTGGCAGATTCTGCCGTTGACCATTCTGTTGTCGTCGCTAGTGGGT
GCAGTACTTGGGGTGATCATGATGCGCGTGCGCAGGGTCGAAAGCGGTACGCCGATCCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTATATGCAGTTTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.417	97.586	0.531
pilD	Vibrio campbellii strain DS40M4	51.59	97.586	0.503
pilD	Acinetobacter baumannii D1279779	52.19	94.483	0.493
pilD	Acinetobacter nosocomialis M2	51.825	94.483	0.49
pilD	Neisseria gonorrhoeae MS11	52.239	92.414	0.483