Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VIBHAR_RS17350 Genome accession   NC_009783
Coordinates   3742350..3742886 (-) Length   178 a.a.
NCBI ID   WP_005432828.1    Uniprot ID   -
Organism   Vibrio campbellii ATCC BAA-1116     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3737350..3747886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBHAR_RS17340 (VIBHAR_03702) csrD 3738504..3740534 (-) 2031 WP_012129007.1 RNase E specificity factor CsrD -
  VIBHAR_RS17345 (VIBHAR_03704) - 3740860..3742266 (+) 1407 Protein_3342 IS4 family transposase -
  VIBHAR_RS17350 (VIBHAR_03705) ssb 3742350..3742886 (-) 537 WP_005432828.1 single-stranded DNA-binding protein Machinery gene
  VIBHAR_RS17355 (VIBHAR_03706) qstR 3743180..3743824 (+) 645 WP_012129010.1 LuxR C-terminal-related transcriptional regulator Regulator
  VIBHAR_RS17360 (VIBHAR_03707) galU 3743989..3744861 (+) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VIBHAR_RS17365 (VIBHAR_03708) uvrA 3745000..3747822 (+) 2823 WP_012129012.1 excinuclease ABC subunit UvrA Machinery gene

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19774.84 Da        Isoelectric Point: 4.9269

>NTDB_id=27022 VIBHAR_RS17350 WP_005432828.1 3742350..3742886(-) (ssb) [Vibrio campbellii ATCC BAA-1116]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQ
PQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=27022 VIBHAR_RS17350 WP_005432828.1 3742350..3742886(-) (ssb) [Vibrio campbellii ATCC BAA-1116]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTTGCTGAAGTAGCAGGCGAGTACCTACGCAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGACCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCACCAATGGGTGGTGGTCAGCCTCAACAGCAGCAAC
AAGGTGGTTGGGGTCAACCTCAACAACCAGCTCAGCAGCAATACAATGCTCCTCAGCAACAGCAACAGGCTCCGCAGCAA
CCTCAGCAGCAATACAACGAGCCACCAATGGATTTCGACGACGATATTCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.447

100

0.809
  ssb Glaesserella parasuis strain SC1401

56.545

100

0.607
  ssb Neisseria meningitidis MC58

48.333

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.333

100

0.489