Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   C3L41_RS02175 Genome accession   NZ_CP026502
Coordinates   445158..445853 (+) Length   231 a.a.
NCBI ID   WP_004259096.1    Uniprot ID   -
Organism   Lactococcus garvieae strain JJJN1     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 440158..450853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3L41_RS02150 - 440392..441093 (+) 702 WP_004259114.1 DeoR/GlpR family DNA-binding transcription regulator -
  C3L41_RS02155 pfkB 441090..442016 (+) 927 WP_004259111.1 1-phosphofructokinase -
  C3L41_RS02160 - 442031..443935 (+) 1905 WP_014024348.1 fructose-specific PTS transporter subunit EIIC -
  C3L41_RS02165 - 444047..444289 (+) 243 WP_003135050.1 type B 50S ribosomal protein L31 -
  C3L41_RS02170 - 444506..445056 (+) 551 Protein_425 YceD family protein -
  C3L41_RS02175 covR 445158..445853 (+) 696 WP_004259096.1 response regulator transcription factor Regulator
  C3L41_RS02180 covS 445942..447432 (+) 1491 WP_014024351.1 HAMP domain-containing histidine kinase Regulator
  C3L41_RS02185 - 447663..448553 (+) 891 WP_014024276.1 IS982-like element ISLgar2 family transposase -
  C3L41_RS02190 - 448847..449164 (+) 318 WP_003131262.1 helix-turn-helix transcriptional regulator -
  C3L41_RS02195 - 449198..449965 (+) 768 WP_014570933.1 polysaccharide biosynthesis protein -
  C3L41_RS02200 - 450005..450784 (+) 780 WP_014570934.1 Wzz/FepE/Etk N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26979.74 Da        Isoelectric Point: 5.4730

>NTDB_id=269943 C3L41_RS02175 WP_004259096.1 445158..445853(+) (covR) [Lactococcus garvieae strain JJJN1]
MNSSKRILIIEDDKNIARFVSLELEHEGYQTAVQGNGRKGLEEAMSKDYDLILLDLMLPELDGFEVARRLRREKDTHIIM
MTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRSLFRREDHIHTIEKSDNTSFRDLVIDKTNRTVHRGKKVIDLTRR
EYDLLLTLMQNVGDVVTREYLVSEVWGYEEGTETNVVDVYIRYLRNKIDVEGRESYIQTVRGMGYVMRDRK

Nucleotide


Download         Length: 696 bp        

>NTDB_id=269943 C3L41_RS02175 WP_004259096.1 445158..445853(+) (covR) [Lactococcus garvieae strain JJJN1]
ATGAATTCATCTAAACGTATTTTGATTATCGAAGACGATAAAAACATTGCGAGATTTGTTTCACTTGAGCTTGAACACGA
AGGATACCAAACTGCGGTTCAAGGCAATGGTCGTAAAGGTCTTGAAGAAGCAATGTCAAAAGATTATGATTTGATTTTGC
TTGACTTAATGCTCCCAGAGCTTGATGGCTTTGAGGTTGCACGACGCTTACGCCGTGAGAAAGATACACATATTATTATG
ATGACTGCACGTGATTCGACAATGGACCGTGTAGCAGGGCTTGATATTGGCGCAGATGACTATATTACAAAACCATTTGC
TATTGAAGAATTGTTAGCGCGTGTCCGCTCACTCTTCCGTCGTGAAGATCATATCCACACGATTGAAAAGTCAGACAATA
CTTCATTCCGTGATTTGGTAATTGATAAGACCAACCGTACTGTACACCGTGGAAAAAAAGTTATTGACCTTACACGCCGT
GAGTACGATTTGCTTTTGACACTGATGCAAAATGTAGGTGATGTCGTAACACGTGAATACTTGGTTTCTGAAGTATGGGG
TTACGAAGAAGGTACAGAAACAAACGTTGTGGACGTTTATATCCGTTATCTGCGTAACAAAATTGACGTGGAGGGCCGTG
AAAGCTATATCCAAACGGTTCGTGGTATGGGATATGTCATGCGTGACCGCAAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-227)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Lactococcus lactis subsp. lactis strain DGCC12653

87.773

99.134

0.87
  covR Streptococcus salivarius strain HSISS4

66.81

100

0.671
  vicR Streptococcus mutans UA159

43.723

100

0.437
  micA Streptococcus pneumoniae Cp1015

42.424

100

0.424

Multiple sequence alignment