Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C3F22_RS15805 Genome accession   NZ_CP026420
Coordinates   3252301..3253788 (-) Length   495 a.a.
NCBI ID   WP_104426948.1    Uniprot ID   -
Organism   Acinetobacter sp. ACNIH1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3247301..3258788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F22_RS15785 (C3F22_15795) ppa 3247351..3247887 (+) 537 WP_005233448.1 inorganic diphosphatase -
  C3F22_RS15790 (C3F22_15800) - 3247988..3249337 (-) 1350 WP_004787358.1 OprD family outer membrane porin -
  C3F22_RS15795 (C3F22_15805) - 3250206..3250940 (+) 735 WP_004787356.1 TorF family putative porin -
  C3F22_RS15805 (C3F22_15815) comM 3252301..3253788 (-) 1488 WP_104426948.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C3F22_RS15810 (C3F22_15820) - 3253854..3254081 (-) 228 WP_004787313.1 accessory factor UbiK family protein -
  C3F22_RS15815 (C3F22_15825) glnK 3254360..3254698 (+) 339 WP_004650081.1 P-II family nitrogen regulator -
  C3F22_RS15820 (C3F22_15830) - 3254759..3256174 (+) 1416 WP_104426949.1 ammonium transporter -
  C3F22_RS15825 (C3F22_15835) nrdR 3256314..3256781 (+) 468 WP_004787309.1 transcriptional regulator NrdR -
  C3F22_RS15830 (C3F22_15840) ribD 3256784..3257872 (+) 1089 WP_104426950.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54286.27 Da        Isoelectric Point: 7.3684

>NTDB_id=269245 C3F22_RS15805 WP_104426948.1 3252301..3253788(-) (comM) [Acinetobacter sp. ACNIH1]
MSFAKIYTRGLLGLHAPLIEVEVHVSSGMPSLTIVGLPEAAVRESKDRVRSAILNSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILVASGQLPENCTDNLEFIGELALDGQLRPVTGILSIAIACQQAQHQLILPSPNAQEASQLPDFQVFAANHL
QEVCAHLAQAETLTPFKTSPLDQHSFYKFDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLASILPPLNT
QENLEVASIYSIANANHPFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLVAAMNPCPCGYAFNQDIRCQCSAESIKRYQNRISGPLLDRIDLHIDVPPLQAQELQDNKPVE
NSETVRQRVITAYNIQIERQNVLNMSLSPKQLEQYAPLDPPAQKMIELAQQKLNLSARGYHRILRVARTIADLNQSPDIQ
TGHLSEALSYRGQHI

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=269245 C3F22_RS15805 WP_104426948.1 3252301..3253788(-) (comM) [Acinetobacter sp. ACNIH1]
ATGTCTTTTGCCAAAATTTATACGCGAGGCCTGTTAGGCCTGCACGCACCTTTAATTGAAGTCGAAGTTCATGTCAGTTC
TGGCATGCCTTCCCTCACCATTGTGGGGCTTCCTGAAGCCGCAGTCAGGGAAAGTAAGGACCGGGTTCGCTCAGCCATTC
TGAATAGCGGCTTTCAGTTTCCGACCAAACGCTTGACCATTAATCTGGCACCTGCCGATCTACCTAAAGACGGCTCACGT
TTGGACTTACCGATTGCGCTAGGAATTTTAGTAGCCTCAGGACAGCTTCCAGAAAATTGCACAGATAACCTTGAATTTAT
TGGTGAACTGGCCTTAGATGGTCAATTGCGGCCTGTAACAGGAATCCTGAGTATTGCAATCGCCTGCCAGCAGGCACAGC
ATCAACTGATCTTGCCTAGTCCGAATGCTCAGGAAGCCTCTCAGCTCCCAGATTTTCAGGTATTTGCCGCCAATCATTTA
CAGGAAGTCTGTGCACATCTGGCTCAAGCAGAAACCTTAACCCCGTTTAAGACCAGTCCATTAGATCAGCACTCTTTTTA
TAAATTTGATCTGGCGGATGTGAAAGGACAATTGCGACCGAGACGTGCCTTGGAAATTGCAGCCGCGGGTGGTCATTCCC
TGCTGTTCCGCGGGCCACCTGGTACAGGTAAAACCTTGTTAGCATCGCGCCTCGCCAGTATTTTGCCTCCCTTAAATACT
CAGGAAAATCTGGAAGTTGCCAGTATCTATTCGATTGCCAATGCCAATCATCCTTTTGGCCAGCGGCCATTTCGGGCACC
GCATCATACTGCCTCTGCCATTGCACTGGTCGGCGGTGGCTCACATCCTAAACCCGGAGAGATCACACTGGCACATTTGG
GCGTTTTATTTTTGGACGAACTGCCTGAGTTTGACCGCAAGGTTTTAGAAGTATTACGTCAGCCGCTTGAGTCCAAAGAA
ATTGTGATTTCGCGTGCTTCCCGGCAAATTACCTTTCCAGCCAATTTTCAGCTGGTGGCAGCCATGAATCCCTGTCCATG
CGGTTATGCATTTAATCAGGACATCCGCTGTCAATGTTCAGCGGAGAGCATCAAACGTTATCAGAACCGAATTTCTGGCC
CATTACTGGATCGGATTGACCTGCATATTGACGTACCACCTTTACAGGCACAGGAATTACAGGACAATAAACCCGTCGAA
AACTCTGAAACGGTCAGACAGCGTGTGATCACCGCCTATAACATTCAGATCGAACGGCAAAATGTCTTGAACATGAGTCT
TAGTCCAAAGCAACTAGAACAATACGCCCCTCTCGATCCACCAGCTCAGAAAATGATTGAACTGGCTCAGCAGAAACTGA
ATTTATCAGCACGAGGCTATCATCGGATTTTGCGTGTTGCCCGAACCATTGCCGATCTTAACCAAAGTCCAGATATTCAG
ACTGGGCATTTATCGGAAGCCTTGTCTTATCGCGGGCAGCACATTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.919

100

0.519
  comM Haemophilus influenzae Rd KW20

51.303

100

0.517
  comM Legionella pneumophila str. Paris

51.008

100

0.511
  comM Legionella pneumophila strain ERS1305867

51.008

100

0.511
  comM Glaesserella parasuis strain SC1401

50.301

100

0.507
  comM Vibrio campbellii strain DS40M4

50.707

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.813

100

0.475

Multiple sequence alignment