Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C3F34_RS05655 Genome accession   NZ_CP026412
Coordinates   1204396..1205913 (+) Length   505 a.a.
NCBI ID   WP_104441224.1    Uniprot ID   A0A2L0HTG3
Organism   Acinetobacter sp. ACNIH2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1199396..1210913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F34_RS05630 (C3F34_05630) ribD 1200327..1201412 (-) 1086 WP_016168499.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  C3F34_RS05635 (C3F34_05635) nrdR 1201421..1201882 (-) 462 WP_026441105.1 transcriptional regulator NrdR -
  C3F34_RS05640 (C3F34_05640) - 1202023..1203426 (-) 1404 WP_104441223.1 ammonium transporter -
  C3F34_RS05645 (C3F34_05645) glnK 1203485..1203823 (-) 339 WP_016168502.1 P-II family nitrogen regulator -
  C3F34_RS05650 (C3F34_05650) - 1204102..1204329 (+) 228 WP_016168503.1 accessory factor UbiK family protein -
  C3F34_RS05655 (C3F34_05655) comM 1204396..1205913 (+) 1518 WP_104441224.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C3F34_RS05660 (C3F34_05660) - 1205951..1206721 (-) 771 WP_104442297.1 TorF family putative porin -
  C3F34_RS05665 (C3F34_05665) - 1207950..1209275 (+) 1326 WP_104441225.1 OprD family outer membrane porin -
  C3F34_RS05670 (C3F34_05670) ppa 1209378..1209902 (-) 525 WP_016168518.1 inorganic diphosphatase -
  C3F34_RS05675 (C3F34_05675) - 1210014..1210412 (-) 399 WP_104441226.1 MAPEG family protein -
  C3F34_RS05680 (C3F34_05680) - 1210521..1210907 (+) 387 WP_016168520.1 hypothetical protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55847.92 Da        Isoelectric Point: 7.9855

>NTDB_id=269176 C3F34_RS05655 WP_104441224.1 1204396..1205913(+) (comM) [Acinetobacter sp. ACNIH2]
MSFAKINTRGLLGLHAPLIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPSKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEQNIDHLEFIGELALDGQLRPTTGTLSIAIACQQAQHQLVLPEQNAFEAAQLPHFDVYAAKNL
KEVCEHLSQHKPLSPVQKSVDSPLHRYKFDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLPSILPPLSS
SENLEVASIYSVANTQHHFGHRPFCSPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQMTYPANFQLIAAMNPCPCGYAFNQDQRCQCSTEAIKRYQNRISGPLLDRIDLHIDVPPLTVHELQEHAPAE
NSDQVRHRVTQAYEQQIQRQNCLNHALNPQQLEQFAGLNEQTKKMLELAQQRLNLSARAYHRVLRVARTIADLANSVEIQ
TGHLSEALSYRQQSLYTVKFQIKNL

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=269176 C3F34_RS05655 WP_104441224.1 1204396..1205913(+) (comM) [Acinetobacter sp. ACNIH2]
ATGTCTTTTGCCAAAATAAATACGCGAGGGCTATTGGGTCTGCACGCCCCACTGATTGAAGTCGAAGTTCATTTAAGTCA
AGGATTACCATCACTTACTATTGTAGGATTAGCAGAAGCTGCTGTTCGGGAAAGTAAAGATCGGGTTCGTTCAGCCATTA
TTAATAGTGGCTTTCAATTCCCAAGTAAGCGACTCACGATTAATCTCGCACCCGCAGATTTGCCCAAAGATGGTTCACGC
CTAGATTTACCCATAGCGTTGGGTATTTTAATTGCATCTGGGCAACTCCCAGAACAAAATATCGATCATCTTGAATTTAT
TGGAGAATTGGCACTAGATGGTCAATTACGTCCAACCACTGGGACTTTAAGTATTGCCATCGCGTGTCAGCAAGCTCAGC
ACCAATTGGTTTTGCCCGAACAAAATGCATTTGAAGCAGCACAACTACCCCATTTTGATGTGTATGCAGCAAAAAATCTC
AAAGAAGTTTGTGAACACTTAAGCCAACACAAACCGTTATCTCCAGTGCAAAAGTCTGTCGACTCGCCTTTACATCGCTA
TAAATTTGATCTGGCTGATGTGAAAGGACAACTTCGTCCACGGCGTGCTTTAGAAATTGCAGCAGCAGGTGGTCACTCCT
TACTGTTTCGCGGCCCCCCTGGCACAGGCAAAACCTTATTGGCATCGCGTCTACCTAGTATTCTTCCACCGCTCAGTTCT
AGTGAAAATTTAGAAGTAGCCAGTATTTATTCTGTTGCCAATACGCAGCATCATTTTGGACACCGCCCTTTTTGCTCGCC
ACATCATACTGCTTCAGCCATTGCATTGGTGGGTGGCGGTTCACATCCTAAACCAGGCGAAATTACTTTAGCCCATTTAG
GCGTTCTATTTTTAGATGAACTTCCTGAATTTGATCGTAAAGTCTTGGAAGTACTTAGACAGCCTTTAGAATCTAAAGAA
ATTGTGATTTCTCGGGCATCCCGTCAAATGACTTATCCTGCCAATTTTCAGTTAATCGCGGCCATGAATCCTTGTCCATG
TGGCTATGCGTTTAATCAGGATCAACGTTGTCAATGTTCCACAGAGGCCATCAAACGTTATCAAAATCGAATTTCTGGTC
CCCTATTAGATCGGATAGATTTGCATATTGATGTACCACCGCTTACGGTACATGAATTACAAGAACATGCACCTGCTGAA
AACTCTGATCAAGTGCGTCATCGTGTGACTCAAGCCTATGAGCAACAAATTCAACGACAAAATTGTTTAAATCATGCTTT
GAATCCACAACAACTGGAACAATTTGCAGGATTGAATGAACAAACCAAAAAAATGCTTGAATTGGCTCAACAACGTTTAA
ATTTATCTGCACGGGCCTATCATCGGGTATTAAGAGTTGCCAGAACCATTGCTGACCTAGCAAATTCTGTTGAAATTCAA
ACTGGACATTTAAGTGAAGCTCTATCGTATCGGCAGCAAAGCCTTTATACGGTTAAATTCCAAATAAAAAACCTCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0HTG3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.303

98.02

0.493
  comM Glaesserella parasuis strain SC1401

49.501

99.208

0.491
  comM Vibrio campbellii strain DS40M4

50.101

98.02

0.491
  comM Legionella pneumophila strain ERS1305867

49.899

98.416

0.491
  comM Legionella pneumophila str. Paris

49.899

98.416

0.491
  comM Haemophilus influenzae Rd KW20

49.699

98.812

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.614

99.406

0.463

Multiple sequence alignment