Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C3F35_RS12550 Genome accession   NZ_CP026387
Coordinates   2599933..2601453 (-) Length   506 a.a.
NCBI ID   WP_103793446.1    Uniprot ID   -
Organism   Leclercia sp. LSNIH3     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2594933..2606453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F35_RS12540 (C3F35_12540) hdfR 2598629..2599450 (-) 822 WP_032615217.1 HTH-type transcriptional regulator HdfR -
  C3F35_RS12545 (C3F35_12545) - 2599569..2599907 (+) 339 WP_032615215.1 DUF413 domain-containing protein -
  C3F35_RS12550 (C3F35_12550) comM 2599933..2601453 (-) 1521 WP_103793446.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C3F35_RS12555 (C3F35_12555) ilvL 2601795..2601893 (+) 99 WP_023620831.1 ilv operon leader peptide -
  C3F35_RS26835 ilvX 2601980..2602030 (+) 51 WP_196221615.1 peptide IlvX -
  C3F35_RS12560 (C3F35_12560) ilvG 2602033..2603679 (+) 1647 WP_103793447.1 acetolactate synthase 2 catalytic subunit -
  C3F35_RS12565 (C3F35_12565) ilvM 2603676..2603945 (+) 270 WP_032615208.1 acetolactate synthase 2 small subunit -
  C3F35_RS12570 (C3F35_12570) ilvE 2603962..2604891 (+) 930 WP_032615204.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55356.74 Da        Isoelectric Point: 8.3579

>NTDB_id=269074 C3F35_RS12550 WP_103793446.1 2599933..2601453(-) (comM) [Leclercia sp. LSNIH3]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLSCSRLSTYEFVGELALTGALRGVPGAISGALAAIQAGREIIVANDNAAEVSLIEQKGCLVAGHL
QEVCAFLEGRHELAAPVQEPFAIEKSDRDIRDIIGQEQGKRALEITAAGAHNLLLIGPPGTGKTMLASRLDGLLPPLSNH
EALESAAILSLVNASSMYKQWRQRPFRAPHHSASLVAMVGGGAIPVPGEISLAHNGILFLDELPEFERRVLDALREPIES
GQINISRTRAKISYPARFQLIAAMNPSPTGHYQGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGLLSQTHTKG
ESSITVRNRVIAAQERQRVRQHKLNAHLDNAEIRRYCLLAAEDALWLEETLTRFGLSVRAWQRLLKVARTIADLEESEQI
ERRHLQEALSYRAIDRLLLHLQKMLR

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=269074 C3F35_RS12550 WP_103793446.1 2599933..2601453(-) (comM) [Leclercia sp. LSNIH3]
ATGTCACTGTCGGTTGTTTATACCCGCGCTGCGTTAGGCGTCAAAGCGCCGCTGATTTCCGTTGAGGTTCACCTCAGTAA
TGGCCTGCCGGGCTTAACCCTGGTCGGCCTGCCAGAAACCACCGTCAAGGAAGCCAGAGACCGGGTACGCAGCGCAATCA
TCAATAGCGGTTATACCTTTCCGGCCAAAAAGATCACCATCAACCTGGCGCCTGCCGATTTACCCAAGGAAGGCGGGCGA
TATGATTTACCTATCGCCATTGCGCTTCTCGCTGCCTCTGAGCAGCTCTCCTGTTCCAGACTGAGCACATACGAGTTCGT
GGGTGAGCTGGCGCTTACAGGCGCATTAAGAGGGGTTCCCGGCGCAATATCGGGTGCCCTGGCGGCCATTCAGGCTGGCA
GAGAGATTATTGTCGCCAATGATAATGCTGCCGAAGTTAGCCTTATTGAACAAAAAGGCTGTCTGGTGGCCGGGCATTTG
CAGGAGGTATGCGCCTTTCTTGAAGGCCGACACGAGCTGGCTGCGCCCGTTCAGGAGCCATTCGCGATAGAAAAGAGCGA
CCGGGACATCAGAGATATCATCGGTCAGGAACAAGGTAAACGGGCGCTGGAGATCACTGCTGCTGGCGCGCACAATCTGC
TGCTGATTGGTCCCCCAGGCACCGGTAAAACCATGCTCGCGAGCCGACTCGATGGCCTGCTCCCGCCACTCAGCAACCAT
GAAGCGCTGGAGAGTGCGGCAATCCTGAGTCTGGTTAACGCCTCATCGATGTATAAGCAGTGGCGTCAGCGCCCTTTTCG
CGCACCGCACCACAGCGCCTCGCTCGTGGCCATGGTGGGCGGGGGCGCGATTCCCGTGCCGGGTGAGATCTCGCTGGCGC
ATAACGGCATTCTCTTTCTGGACGAGTTACCTGAGTTTGAAAGACGTGTACTGGATGCCTTACGCGAGCCTATCGAATCC
GGGCAGATAAATATCTCCCGCACCCGCGCAAAGATCAGTTATCCCGCTCGCTTTCAGCTTATCGCCGCCATGAATCCCAG
CCCAACGGGGCACTATCAAGGCAACCATAATCGCTGTTCGCCAGAGCAGACGCTTCGCTATCTGGGACGCTTATCGGGAC
CATTTTTGGATCGCTTCGATTTATCGCTTGAGATCCCGCTACCGCCGCCAGGGTTATTAAGCCAGACGCATACCAAAGGA
GAATCCAGCATCACCGTGCGAAACAGAGTGATTGCTGCGCAGGAGCGACAGCGGGTACGACAACATAAACTCAATGCTCA
CCTGGATAATGCGGAGATACGCAGGTATTGCTTACTTGCGGCAGAAGACGCCCTGTGGCTGGAAGAGACCCTTACCCGGT
TTGGCCTGTCGGTGCGTGCCTGGCAGCGGCTGTTGAAGGTGGCCCGTACAATTGCCGATCTGGAAGAGAGTGAACAGATT
GAACGCAGGCACCTGCAGGAAGCCCTGAGCTATCGCGCTATCGATCGCTTGCTGCTGCACCTGCAAAAGATGCTGAGATG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.904

100

0.613
  comM Glaesserella parasuis strain SC1401

60.355

100

0.605
  comM Vibrio campbellii strain DS40M4

59.245

99.407

0.589
  comM Vibrio cholerae strain A1552

59.363

99.209

0.589
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.857

100

0.433

Multiple sequence alignment