Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C3F38_RS25175 Genome accession   NZ_CP026383
Coordinates   5236303..5236836 (-) Length   177 a.a.
NCBI ID   WP_033654707.1    Uniprot ID   -
Organism   Serratia sp. SSNIH1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5231303..5241836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F38_RS25145 (C3F38_25140) - 5231628..5232989 (-) 1362 WP_004936819.1 NCS2 family permease -
  C3F38_RS25150 (C3F38_25145) - 5233322..5233729 (-) 408 WP_038874298.1 VOC family protein -
  C3F38_RS25155 (C3F38_25150) - 5233777..5234445 (-) 669 WP_038874300.1 glutathione S-transferase family protein -
  C3F38_RS25160 (C3F38_25155) - 5234442..5234885 (-) 444 WP_055317022.1 lipocalin-like domain-containing protein -
  C3F38_RS25165 (C3F38_25160) - 5235082..5235342 (+) 261 WP_025304435.1 YdgH/BhsA/McbA-like domain containing protein -
  C3F38_RS25170 (C3F38_25165) - 5235490..5236239 (+) 750 WP_055317023.1 3-oxoacyl-ACP reductase family protein -
  C3F38_RS25175 (C3F38_25170) ssb 5236303..5236836 (-) 534 WP_033654707.1 single-stranded DNA-binding protein SSB1 Machinery gene
  C3F38_RS25185 (C3F38_25180) uvrA 5237114..5239942 (+) 2829 WP_055317024.1 excinuclease ABC subunit UvrA -
  C3F38_RS25190 (C3F38_25185) - 5240172..5241224 (+) 1053 WP_103767511.1 NAD(P)-dependent alcohol dehydrogenase -
  C3F38_RS25195 (C3F38_25190) maa 5241255..5241812 (-) 558 WP_038874310.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18865.76 Da        Isoelectric Point: 5.2358

>NTDB_id=269042 C3F38_RS25175 WP_033654707.1 5236303..5236836(-) (ssb) [Serratia sp. SSNIH1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
AASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=269042 C3F38_RS25175 WP_033654707.1 5236303..5236836(-) (ssb) [Serratia sp. SSNIH1]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCTCCG
GCGGCCAGCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.824

100

0.78
  ssb Glaesserella parasuis strain SC1401

59.358

100

0.627
  ssb Neisseria meningitidis MC58

47.594

100

0.503
  ssb Neisseria gonorrhoeae MS11

47.594

100

0.503
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.362

Multiple sequence alignment