Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C3E99_RS18300 Genome accession   NZ_CP026381
Coordinates   3964996..3965544 (-) Length   182 a.a.
NCBI ID   WP_104960214.1    Uniprot ID   A0A2L0VUF9
Organism   Sphingopyxis sp. MG     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3959996..3970544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3E99_RS18275 (C3E99_18270) - 3961328..3961789 (+) 462 WP_067112894.1 thioesterase family protein -
  C3E99_RS18280 (C3E99_18275) - 3962122..3962580 (+) 459 WP_104960213.1 hypothetical protein -
  C3E99_RS18285 (C3E99_18280) ribD 3962618..3963562 (+) 945 WP_104960427.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  C3E99_RS18290 (C3E99_18285) - 3963570..3964196 (+) 627 WP_076073428.1 riboflavin synthase -
  C3E99_RS18295 (C3E99_18290) - 3964485..3964967 (-) 483 WP_076073429.1 MmcB family DNA repair protein -
  C3E99_RS18300 (C3E99_18295) ssb 3964996..3965544 (-) 549 WP_104960214.1 single-stranded DNA-binding protein Machinery gene
  C3E99_RS18305 (C3E99_18300) - 3965577..3967451 (-) 1875 WP_076073431.1 ferrous iron transporter B -
  C3E99_RS18310 (C3E99_18305) - 3967448..3967699 (-) 252 WP_067111673.1 FeoA family protein -
  C3E99_RS18315 (C3E99_18310) - 3967753..3968436 (-) 684 WP_076073432.1 COQ9 family protein -
  C3E99_RS18320 (C3E99_18315) - 3968436..3969350 (-) 915 WP_083674930.1 DMT family transporter -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 18502.16 Da        Isoelectric Point: 5.0006

>NTDB_id=269021 C3E99_RS18300 WP_104960214.1 3964996..3965544(-) (ssb) [Sphingopyxis sp. MG]
MAGSVNKVILIGNLGADPEIKSFQNGGRIANIRIATSESWKDRMTGERKERTEWHNVVINGDGLVGVVERYLKKGSKVYV
EGSLRTRKWQDRDGNDRYTTEVVIAGMGGALTMLDGAPGGGGSRGGGDWGGGGSGSGDSWGQGGGGGSSGGGGWNQGGGA
SGGGGGGGRPPFDDDLDDDVPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=269021 C3E99_RS18300 WP_104960214.1 3964996..3965544(-) (ssb) [Sphingopyxis sp. MG]
ATGGCAGGCAGCGTCAACAAGGTTATCCTGATCGGCAATCTGGGCGCCGATCCCGAAATCAAGTCGTTCCAGAACGGCGG
CCGGATCGCCAATATCCGCATCGCCACCTCCGAAAGCTGGAAGGACCGGATGACCGGCGAGCGCAAGGAGCGCACCGAAT
GGCACAATGTCGTCATCAACGGCGACGGGCTGGTCGGCGTCGTCGAGCGCTATCTGAAGAAGGGCAGCAAGGTCTATGTC
GAGGGGTCGCTGCGCACCCGCAAGTGGCAGGACCGCGACGGCAACGACCGCTATACGACCGAGGTGGTGATCGCCGGCAT
GGGCGGCGCGCTGACGATGCTCGACGGCGCCCCCGGCGGCGGCGGATCGCGCGGCGGCGGTGACTGGGGCGGCGGCGGAT
CGGGTTCGGGCGACAGCTGGGGACAGGGCGGCGGCGGCGGTTCTTCCGGCGGCGGCGGCTGGAACCAGGGCGGCGGCGCC
TCGGGCGGCGGCGGCGGTGGCGGACGCCCGCCCTTCGACGACGACCTCGACGACGATGTTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0VUF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.154

100

0.495
  ssb Vibrio cholerae strain A1552

47.778

98.901

0.473
  ssb Neisseria meningitidis MC58

36.066

100

0.363
  ssb Neisseria gonorrhoeae MS11

34.921

100

0.363

Multiple sequence alignment