Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C2E16_RS19870 Genome accession   NZ_CP026378
Coordinates   4182262..4183782 (+) Length   506 a.a.
NCBI ID   WP_038629011.1    Uniprot ID   -
Organism   Mixta calida strain DSM 22759     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4177262..4188782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2E16_RS19850 (C2E16_19845) ilvE 4178831..4179760 (-) 930 WP_038629004.1 branched-chain-amino-acid transaminase -
  C2E16_RS19855 (C2E16_19850) ilvM 4179779..4180036 (-) 258 WP_038629006.1 acetolactate synthase 2 small subunit -
  C2E16_RS19860 (C2E16_19855) ilvG 4180033..4181679 (-) 1647 WP_038629008.1 acetolactate synthase 2 catalytic subunit -
  C2E16_RS19865 (C2E16_19860) ilvL 4181829..4181927 (-) 99 WP_071883719.1 ilv operon leader peptide -
  C2E16_RS19870 (C2E16_19865) comM 4182262..4183782 (+) 1521 WP_038629011.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C2E16_RS19875 (C2E16_19870) - 4183843..4184181 (-) 339 WP_038629013.1 DUF413 domain-containing protein -
  C2E16_RS19880 (C2E16_19875) hdfR 4184303..4185130 (+) 828 WP_038629015.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54790.18 Da        Isoelectric Point: 7.6118

>NTDB_id=269011 C2E16_RS19870 WP_038629011.1 4182262..4183782(+) (comM) [Mixta calida strain DSM 22759]
MSLSHVATRAALGVTAPLVTVEVHISNGLPGLSLVGLAETTVKEARDRVRSAIINSGFTFPAKRITVNLAPADLPKEGGR
FDLPIAIAILAASEQLPEAKLAQFEFLGELALSGALRGVQSAIPAAMAANEAGRTLIVPAENAPDVGLVEKKESLVAGNL
PEVCAFLLNQCQLHPGHADLPQDEAKSEDLHDIIGQQQGKRALEVAAAGGHNLLLIGPPGTGKTMLAMRLIGLLPPLSDR
EALECATVASIINSGDVHKQWRKRPFRTPHHSSTLYALVGGGSLPQPGEITLAHNGILFLDELPEFSRKTLDALREPLET
GEITISRARAKVSWPARFQLVAAMNPGPSGHYQGKHNRCTPQQTLRYLSRLSGPFLDRFDLSLEIPLLPAGMLSQPHKEM
ESSAQVRQRVIAARNQQLARQGKINALMDNNEVQRWCALAKEDAEWLESILIALGLSVRAWQRLLKVSRTIADLAGEEAL
TRSHLLEALSYRGMDRMLIHLHKSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=269011 C2E16_RS19870 WP_038629011.1 4182262..4183782(+) (comM) [Mixta calida strain DSM 22759]
ATGTCTTTATCCCACGTTGCCACACGTGCAGCGCTTGGCGTCACGGCGCCACTGGTTACGGTGGAAGTACATATCAGCAA
TGGATTGCCAGGGCTTTCGCTGGTGGGTTTGGCCGAGACGACGGTAAAAGAGGCGCGCGATCGCGTACGTAGCGCTATCA
TCAACAGCGGCTTCACCTTTCCGGCTAAACGTATCACGGTTAATCTGGCCCCAGCGGATCTGCCTAAAGAGGGCGGACGT
TTCGATCTTCCCATCGCCATCGCAATTCTCGCGGCTTCTGAACAGCTTCCTGAGGCTAAACTGGCACAGTTTGAATTCCT
GGGCGAGCTGGCGCTCAGCGGAGCACTCAGAGGCGTACAGAGCGCCATCCCGGCGGCGATGGCGGCAAATGAAGCGGGCA
GGACGCTGATCGTACCGGCGGAAAATGCGCCAGATGTCGGTTTAGTAGAAAAGAAAGAATCACTGGTTGCGGGAAATCTG
CCGGAGGTATGTGCTTTTCTTCTTAATCAATGTCAGTTGCATCCCGGACACGCAGATTTACCGCAAGACGAGGCGAAAAG
TGAAGATCTGCACGATATCATCGGTCAGCAGCAAGGTAAGCGCGCACTGGAGGTGGCCGCAGCGGGAGGACATAATCTGC
TGCTTATCGGCCCGCCCGGCACAGGAAAGACTATGTTGGCGATGCGGCTCATTGGTCTGTTGCCGCCGCTTAGCGATCGG
GAGGCGCTGGAGTGCGCGACCGTGGCAAGTATCATTAATAGTGGAGACGTTCATAAGCAATGGCGAAAACGTCCGTTTCG
AACGCCTCATCATAGCTCAACACTGTATGCTCTGGTTGGCGGCGGTTCGCTTCCTCAGCCAGGTGAAATCACGCTGGCAC
ATAATGGTATTTTATTCCTTGATGAGCTACCCGAATTTAGCCGTAAAACGCTGGATGCGCTGCGTGAGCCGCTTGAGACA
GGGGAAATCACTATTTCACGCGCCCGCGCTAAAGTGAGCTGGCCAGCGCGCTTTCAGTTAGTTGCCGCTATGAACCCTGG
CCCCTCAGGACATTACCAGGGCAAGCATAACCGCTGTACACCACAGCAGACGCTGCGTTACCTCAGCCGGTTATCAGGGC
CGTTCCTCGATCGCTTTGATCTCTCTTTAGAGATTCCTCTTCTTCCCGCCGGAATGCTCAGCCAGCCGCATAAAGAAATG
GAATCCAGCGCTCAGGTGCGGCAACGCGTTATCGCCGCGCGTAATCAGCAGTTAGCGCGTCAGGGAAAGATTAATGCATT
AATGGATAACAATGAGGTGCAACGGTGGTGCGCGCTGGCGAAAGAGGATGCCGAATGGCTTGAATCAATACTTATTGCCC
TGGGACTCTCCGTCAGGGCATGGCAAAGGCTACTGAAGGTATCGCGTACGATTGCCGATCTGGCTGGCGAGGAGGCGCTT
ACGCGTTCACATCTGCTGGAGGCGTTAAGCTATCGCGGGATGGATCGTATGTTAATTCATTTGCATAAAAGCCTGGAATG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

61.753

99.209

0.613
  comM Vibrio campbellii strain DS40M4

61.386

99.802

0.613
  comM Glaesserella parasuis strain SC1401

60.827

100

0.611
  comM Haemophilus influenzae Rd KW20

60.158

100

0.603
  comM Legionella pneumophila str. Paris

49.698

98.221

0.488
  comM Legionella pneumophila strain ERS1305867

49.698

98.221

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.676

100

0.437

Multiple sequence alignment