Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C2E16_RS19070 Genome accession   NZ_CP026378
Coordinates   4006929..4007474 (-) Length   181 a.a.
NCBI ID   WP_104951609.1    Uniprot ID   -
Organism   Mixta calida strain DSM 22759     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4001929..4012474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2E16_RS19055 (C2E16_19050) - 4003072..4004673 (+) 1602 WP_084971302.1 inorganic phosphate transporter -
  C2E16_RS19060 (C2E16_19055) - 4004793..4005095 (+) 303 WP_084971300.1 hypothetical protein -
  C2E16_RS19065 (C2E16_19060) traT 4005149..4005880 (-) 732 WP_084971298.1 complement resistance protein TraT -
  C2E16_RS19070 (C2E16_19065) ssb 4006929..4007474 (-) 546 WP_104951609.1 single-stranded DNA-binding protein Machinery gene
  C2E16_RS19075 (C2E16_19070) uvrA 4007700..4010531 (+) 2832 WP_038623721.1 excinuclease ABC subunit UvrA -
  C2E16_RS19080 (C2E16_19075) - 4010827..4011891 (+) 1065 WP_052134002.1 NAD(P)-dependent alcohol dehydrogenase -
  C2E16_RS19085 (C2E16_19080) - 4011929..4012267 (-) 339 WP_038629843.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19281.19 Da        Isoelectric Point: 5.2456

>NTDB_id=269009 C2E16_RS19070 WP_104951609.1 4006929..4007474(-) (ssb) [Mixta calida strain DSM 22759]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQERYTTEVVVNVGGTMQMLGGRQNGGAGAQASGGMGGGGNNNGWGQPQQPQGGNQFSGGGQAPSRP
QQQSAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=269009 C2E16_RS19070 WP_104951609.1 4006929..4007474(-) (ssb) [Mixta calida strain DSM 22759]
ATGGCCAGCAGAGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTGCGTTATATGCCGAATGG
TGGAGCCGTAGCGAATATTACGCTGGCGACATCCGAAAGCTGGCGTGACAAGCAGACCGGAGAGACCAAAGAGAAAACGG
AATGGCACCGTGTCGTGCTGTTCGGCAAACTGGCGGAAGTGGCGGGCGAATACCTGCGCAAAGGTTCCCAGGTTTATATC
GAAGGTTCTCTGCAAACGCGCAAGTGGCAGGATCAGAGCGGCCAGGAACGTTACACTACGGAAGTGGTGGTGAACGTCGG
CGGTACCATGCAGATGCTGGGCGGCCGCCAGAACGGCGGCGCGGGCGCGCAGGCCAGTGGCGGCATGGGCGGCGGCGGCA
ACAACAACGGTTGGGGCCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGGCCAGGCGCCTTCCCGTCCG
CAGCAGCAGAGCGCGCCGGCTAACAACGAGCCGCCGATGGATTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.626

100

0.74
  ssb Glaesserella parasuis strain SC1401

56.989

100

0.586
  ssb Neisseria gonorrhoeae MS11

47.191

98.343

0.464
  ssb Neisseria meningitidis MC58

46.369

98.895

0.459

Multiple sequence alignment