Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C2E15_RS20450 Genome accession   NZ_CP026377
Coordinates   4370816..4372336 (+) Length   506 a.a.
NCBI ID   WP_104958906.1    Uniprot ID   A0A1X1E4P2
Organism   Mixta gaviniae strain DSM 22758     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4365816..4377336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2E15_RS20430 (C2E15_20425) ilvE 4367384..4368313 (-) 930 WP_104958903.1 branched-chain-amino-acid transaminase -
  C2E15_RS20435 (C2E15_20430) ilvM 4368332..4368589 (-) 258 WP_104958904.1 acetolactate synthase 2 small subunit -
  C2E15_RS20440 (C2E15_20435) ilvG 4368586..4370232 (-) 1647 WP_104958905.1 acetolactate synthase 2 catalytic subunit -
  C2E15_RS20445 (C2E15_20440) ilvL 4370382..4370480 (-) 99 WP_071883719.1 ilv operon leader peptide -
  C2E15_RS20450 (C2E15_20445) comM 4370816..4372336 (+) 1521 WP_104958906.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C2E15_RS20455 (C2E15_20450) - 4372397..4372735 (-) 339 WP_085069415.1 DUF413 domain-containing protein -
  C2E15_RS20460 (C2E15_20455) hdfR 4372857..4373684 (+) 828 WP_104958907.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54975.51 Da        Isoelectric Point: 8.5121

>NTDB_id=268990 C2E15_RS20450 WP_104958906.1 4370816..4372336(+) (comM) [Mixta gaviniae strain DSM 22758]
MSLSHVVTRAALGVTAPLVTVEVHISNGLPGLSLVGLAETTVKEARDRVRSAIINSGFAFPAKRITVNLAPADLPKEGGR
FDLPIAIAILAASEQLPEAKLAQFEFLGELALSGALRGVQGAIPAAMAAKDAGRTLILPAENAPDVGLVEQEKSLVADTL
PEICAFLLNQGQLVHGHTELPQEEAKSEDLRDIIGQQQGKRALEVAAAGGHNLLLIGPPGTGKTMLAMRLIGLLPPLSDR
EALECATVASIVNRGGVHKQWRKRPFRVPHHSSTLYALIGGGSLPQPGEITLAHNGVLFLDELPEFSRKTLDALREPLEN
GEITISRARAKVNWPARFQLVAAMNPSPAGHYQGKHNRCTPQQTLRYLSRLSGPFLDRFDLSLEIPLLPAGMLSRAHKDA
ESSAEVRQRVIDARQRQLARQGKINALMDNSEVERWCALIKEDAEWLESILLTLGLSVRGWQRLLKVSRTIADLAGEKTL
TRSHLLEALSYRGMDRMLVHLHKSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=268990 C2E15_RS20450 WP_104958906.1 4370816..4372336(+) (comM) [Mixta gaviniae strain DSM 22758]
ATGTCTTTATCCCACGTGGTTACGCGCGCGGCGCTGGGCGTTACGGCTCCGTTGGTAACGGTTGAAGTGCATATTAGCAA
TGGCCTGCCGGGGCTTTCGCTGGTGGGATTAGCCGAAACCACCGTAAAAGAGGCGCGCGATCGCGTGCGTAGCGCCATTA
TTAACAGTGGCTTTGCCTTTCCGGCTAAGCGCATCACCGTTAACCTCGCGCCAGCGGACCTGCCGAAGGAAGGTGGACGT
TTCGATCTCCCGATCGCTATCGCGATTCTCGCGGCTTCTGAGCAGCTCCCTGAAGCTAAACTGGCACAGTTTGAATTCCT
GGGCGAACTGGCGCTTAGCGGCGCATTACGGGGCGTTCAGGGTGCCATACCGGCGGCGATGGCTGCAAAGGATGCCGGCA
GGACGCTGATTCTGCCGGCGGAGAATGCGCCGGATGTTGGTCTGGTGGAACAGGAAAAATCACTGGTTGCTGATACCCTG
CCGGAGATATGTGCTTTTCTACTAAATCAGGGTCAACTGGTTCACGGACACACGGAATTACCGCAAGAAGAAGCGAAAAG
CGAAGATCTGCGCGATATCATCGGCCAGCAGCAGGGTAAGCGCGCACTGGAAGTCGCCGCAGCGGGAGGACATAATCTAC
TGCTTATCGGGCCGCCCGGCACAGGAAAGACTATGCTCGCGATGCGGCTGATTGGCCTGCTGCCGCCGCTTAGCGATCGG
GAGGCACTGGAGTGCGCGACCGTCGCCAGCATCGTTAACCGTGGCGGCGTTCATAAACAGTGGCGCAAGCGCCCTTTCCG
GGTTCCTCATCATAGCTCAACGCTGTATGCCCTGATCGGCGGCGGCTCGCTGCCCCAGCCTGGCGAAATCACGCTGGCGC
ATAATGGCGTGCTGTTTCTGGATGAGCTGCCGGAATTTAGTCGAAAGACGCTGGACGCGCTGCGCGAGCCGCTTGAAAAC
GGCGAAATTACAATTTCACGCGCACGCGCGAAAGTAAACTGGCCCGCACGCTTTCAGCTGGTTGCTGCAATGAATCCAAG
CCCTGCAGGACATTATCAGGGCAAGCATAACCGCTGTACGCCGCAGCAGACGCTGCGCTATCTCAGCCGACTATCGGGCC
CCTTTCTCGACCGCTTCGACCTCTCTTTAGAGATCCCGCTGCTTCCTGCCGGCATGCTGAGTCGGGCACATAAAGACGCA
GAATCAAGCGCAGAGGTGCGGCAACGCGTTATCGACGCACGTCAGCGGCAGTTGGCGCGTCAGGGAAAGATCAACGCCCT
GATGGATAACAGCGAGGTAGAGCGTTGGTGCGCTTTAATAAAGGAAGATGCCGAGTGGCTGGAATCGATACTTCTTACGC
TGGGGCTCTCCGTCAGGGGCTGGCAGAGGCTATTAAAGGTGTCGCGTACCATCGCCGATTTGGCTGGCGAGAAGACACTT
ACGCGTTCGCATTTGCTGGAGGCATTAAGCTATCGCGGCATGGATCGCATGTTAGTGCATTTGCATAAGAGTCTGGAATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1E4P2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

61.753

99.209

0.613
  comM Haemophilus influenzae Rd KW20

60.947

100

0.611
  comM Glaesserella parasuis strain SC1401

60.827

100

0.611
  comM Vibrio campbellii strain DS40M4

61.155

99.209

0.607
  comM Legionella pneumophila str. Paris

49.698

98.221

0.488
  comM Legionella pneumophila strain ERS1305867

49.698

98.221

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

100

0.433

Multiple sequence alignment