Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C2E15_RS19645 Genome accession   NZ_CP026377
Coordinates   4191444..4191995 (-) Length   183 a.a.
NCBI ID   WP_104958783.1    Uniprot ID   A0A2L0IKR0
Organism   Mixta gaviniae strain DSM 22758     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4186444..4196995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2E15_RS19635 (C2E15_19630) - 4186539..4188470 (-) 1932 WP_104958781.1 methyl-accepting chemotaxis protein -
  C2E15_RS19640 (C2E15_19635) traT 4189020..4189751 (-) 732 WP_104958782.1 complement resistance protein TraT -
  C2E15_RS19645 (C2E15_19640) ssb 4191444..4191995 (-) 552 WP_104958783.1 single-stranded DNA-binding protein Machinery gene
  C2E15_RS19650 (C2E15_19645) uvrA 4192221..4195052 (+) 2832 WP_104958784.1 excinuclease ABC subunit UvrA -
  C2E15_RS19655 (C2E15_19650) - 4195336..4196400 (+) 1065 WP_104958785.1 NAD(P)-dependent alcohol dehydrogenase -
  C2E15_RS19660 (C2E15_19655) - 4196438..4196776 (-) 339 WP_104958786.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19509.39 Da        Isoelectric Point: 5.2456

>NTDB_id=268988 C2E15_RS19645 WP_104958783.1 4191444..4191995(-) (ssb) [Mixta gaviniae strain DSM 22758]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQERYTTEVVVNVGGTMQMLGGRQNGGAGAQSGGGMGGGNSNNNNGWGQPQQPQGGNQFSGGGQAPA
RPQQQSAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=268988 C2E15_RS19645 WP_104958783.1 4191444..4191995(-) (ssb) [Mixta gaviniae strain DSM 22758]
ATGGCCAGCAGAGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTGCGTTATATGCCGAATGG
CGGAGCCGTAGCGAACATTACGCTGGCGACTTCCGAAAGCTGGCGTGACAAGCAGACCGGAGAGACCAAAGAGAAAACGG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCGGGCGAATACCTGCGCAAAGGTTCCCAGGTTTATATC
GAAGGTTCTCTGCAGACGCGCAAATGGCAGGATCAGAGCGGCCAGGAACGCTACACCACGGAAGTGGTGGTGAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGAACGGCGGCGCAGGCGCGCAGTCCGGCGGCGGTATGGGCGGCGGCAACA
GCAACAACAACAACGGTTGGGGCCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGGCCAGGCACCTGCC
CGTCCGCAGCAGCAGAGCGCGCCGGCTAACAACGAGCCGCCGATGGATTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L0IKR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.118

100

0.743
  ssb Glaesserella parasuis strain SC1401

56.771

100

0.596
  ssb Neisseria meningitidis MC58

47.753

97.268

0.464
  ssb Neisseria gonorrhoeae MS11

47.753

97.268

0.464
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.757

100

0.372

Multiple sequence alignment