Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PH4a_RS05265 Genome accession   NZ_CP026364
Coordinates   1150310..1150840 (+) Length   176 a.a.
NCBI ID   WP_129038299.1    Uniprot ID   -
Organism   Proteus hauseri strain 15H5D-4a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1145310..1155840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH4a_RS05260 (PH4a_05280) uvrA 1147226..1150060 (-) 2835 WP_129038297.1 excinuclease ABC subunit UvrA -
  PH4a_RS05265 (PH4a_05285) ssb 1150310..1150840 (+) 531 WP_129038299.1 single-stranded DNA-binding protein Machinery gene
  PH4a_RS05270 (PH4a_05290) zur 1151175..1151705 (+) 531 WP_129038301.1 zinc uptake transcriptional repressor Zur -
  PH4a_RS05275 (PH4a_05295) lexA 1151804..1152415 (-) 612 WP_064721284.1 transcriptional repressor LexA -
  PH4a_RS05280 (PH4a_05300) - 1152543..1152914 (-) 372 WP_129038304.1 diacylglycerol kinase -
  PH4a_RS05285 (PH4a_05305) plsB 1153045..1155528 (+) 2484 WP_129038306.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19005.00 Da        Isoelectric Point: 4.9468

>NTDB_id=268920 PH4a_RS05265 WP_129038299.1 1150310..1150840(+) (ssb) [Proteus hauseri strain 15H5D-4a]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQGGQDRYSTEVVVNIGGTMQMLGSGGRGQDNAPSQGGQGGWGQPQQPQASQQFSGGGTQSRPAQQPAAP
AQSNEPPIDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=268920 PH4a_RS05265 WP_129038299.1 1150310..1150840(+) (ssb) [Proteus hauseri strain 15H5D-4a]
ATGGCGAGCAGAGGCGTAAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCTAGTGG
TGGTGCAGTAGCAAACCTGACACTGGCAACTTCAGAAAGCTGGCGCGATAAACAAACCGGTGAAATGAAAGAAAAAACCG
AGTGGCACCGTGTGGTAATTTTCGGCAAGTTAGCTGAAATTGCAGGCGAATATCTGCGCAAAGGTTCACAAGTTTATATC
GAAGGCCAATTACAAACTCGTAAATGGCAAGACCAAGGTGGTCAAGACAGATATAGCACTGAAGTTGTCGTTAATATCGG
TGGCACCATGCAGATGTTAGGTAGCGGCGGTCGAGGACAAGACAACGCACCTTCACAAGGTGGTCAAGGCGGTTGGGGTC
AACCACAACAGCCACAAGCATCACAACAATTTAGCGGTGGTGGCACACAATCTCGCCCTGCTCAACAACCTGCTGCCCCA
GCACAAAGCAACGAACCCCCTATCGACTTCGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.745

100

0.756
  ssb Glaesserella parasuis strain SC1401

56.452

100

0.597
  ssb Neisseria meningitidis MC58

45.455

100

0.455
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.455

Multiple sequence alignment