Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SHEWANA3_RS18765 Genome accession   NC_008577
Coordinates   4310551..4311258 (-) Length   235 a.a.
NCBI ID   WP_011718370.1    Uniprot ID   A0L193
Organism   Shewanella sp. ANA-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4305551..4316258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHEWANA3_RS18755 (Shewana3_3588) - 4306611..4309442 (-) 2832 WP_011718368.1 M16 family metallopeptidase -
  SHEWANA3_RS18760 (Shewana3_3589) - 4309733..4310326 (-) 594 WP_011718369.1 hypothetical protein -
  SHEWANA3_RS18765 (Shewana3_3590) ssb 4310551..4311258 (-) 708 WP_011718370.1 single-stranded DNA-binding protein Machinery gene
  SHEWANA3_RS18770 (Shewana3_3591) - 4311366..4312733 (-) 1368 WP_011718371.1 MFS transporter -
  SHEWANA3_RS23655 - 4312990..4313127 (-) 138 WP_166485362.1 hypothetical protein -
  SHEWANA3_RS18775 (Shewana3_3592) uvrA 4313144..4315996 (+) 2853 WP_011718372.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 25631.00 Da        Isoelectric Point: 5.7610

>NTDB_id=26885 SHEWANA3_RS18765 WP_011718370.1 4310551..4311258(-) (ssb) [Shewanella sp. ANA-3]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGGRNQGQSQGQGQGAPMGGMQQNAGYQAAPAQTAPAQNQYAPAQQSYQ
APAQQPQSGYNQQPAQQSYGQQQQSHAQPQQSGYAPKPAAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 708 bp        

>NTDB_id=26885 SHEWANA3_RS18765 WP_011718370.1 4310551..4311258(-) (ssb) [Shewanella sp. ANA-3]
ATGGCCAGTCGTGGTGTTAACAAGGTAATTTTGGTTGGCAATTTGGGACAAGATCCAGAAGTACGTTACATGCCAAACGG
TAACGCAGTCGCTAACATCACAGTAGCGACCAGCGAATCGTGGAAAGACCAACAAGGTCAACAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTTCTGTTTGGCAAGTTGGCTGAAATTACGGGTGAGTACCTGCGTAAAGGTTCACAGGTTTACCTCGAA
GGTAAACTGCAGACGCGTAAGTGGAAAGACCAAAGCGGTCAAGATCGTTACAGCACTGAAGTGGTTATCGACCAAAGCGG
TAGCATGCAAATGTTAGGTGGTCGCAATCAAGGCCAAAGTCAAGGTCAAGGCCAAGGTGCACCTATGGGTGGCATGCAAC
AAAACGCGGGTTACCAAGCGGCTCCGGCTCAAACTGCGCCAGCGCAAAACCAATACGCGCCAGCACAGCAAAGTTACCAA
GCACCTGCACAGCAGCCACAATCTGGCTACAATCAGCAGCCTGCTCAGCAAAGCTATGGCCAGCAACAGCAATCCCATGC
TCAGCCACAGCAAAGTGGTTATGCGCCTAAGCCTGCTGCACCAGCCTATCAAGCACCAGCGGCACCTGCACAACGTCCAG
CACCACAGCCACAACAAAACTTTACCCCAGATTTGGATGACGGTTGGGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0L193

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.008

100

0.545
  ssb Glaesserella parasuis strain SC1401

44.397

98.723

0.438
  ssb Neisseria gonorrhoeae MS11

41.026

99.574

0.409
  ssb Neisseria meningitidis MC58

41.379

98.723

0.409

Multiple sequence alignment