Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   BV11031_RS05595 Genome accession   NZ_CP026362
Coordinates   1028797..1029093 (+) Length   98 a.a.
NCBI ID   WP_010328246.1    Uniprot ID   -
Organism   Bacillus vallismortis strain DSM 11031     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1023797..1034093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV11031_RS05570 (BV11031_05540) - 1024485..1024895 (+) 411 WP_010328018.1 CBS domain-containing protein -
  BV11031_RS05575 (BV11031_05545) - 1025040..1026392 (-) 1353 WP_129550697.1 IS1182 family transposase -
  BV11031_RS05585 (BV11031_05555) comGA 1026689..1027759 (+) 1071 WP_010328244.1 competence protein ComGA Machinery gene
  BV11031_RS05590 (BV11031_05560) comGB 1027746..1028783 (+) 1038 WP_010328245.1 competence type IV pilus assembly protein ComGB Machinery gene
  BV11031_RS05595 (BV11031_05565) comGC 1028797..1029093 (+) 297 WP_010328246.1 comG operon protein ComGC Machinery gene
  BV11031_RS05600 (BV11031_05570) comGD 1029083..1029511 (+) 429 WP_010328247.1 competence type IV pilus minor pilin ComGD Machinery gene
  BV11031_RS05605 (BV11031_05575) comGE 1029495..1029842 (+) 348 WP_010328248.1 competence type IV pilus minor pilin ComGE Machinery gene
  BV11031_RS05610 (BV11031_05580) comGF 1029868..1030251 (+) 384 WP_026014434.1 competence type IV pilus minor pilin ComGF Machinery gene
  BV11031_RS05615 (BV11031_05585) comGG 1030252..1030626 (+) 375 WP_010328250.1 competence type IV pilus minor pilin ComGG Machinery gene
  BV11031_RS05620 (BV11031_05590) - 1030698..1030877 (+) 180 WP_010328251.1 YqzE family protein -
  BV11031_RS05625 (BV11031_05595) - 1030921..1031247 (-) 327 WP_026014435.1 YqzG/YhdC family protein -
  BV11031_RS05630 (BV11031_05600) tapA 1031516..1032280 (+) 765 WP_010328253.1 amyloid fiber anchoring/assembly protein TapA -
  BV11031_RS05635 (BV11031_05605) - 1032264..1032836 (+) 573 WP_082246288.1 signal peptidase I -
  BV11031_RS05640 (BV11031_05610) - 1032899..1033684 (+) 786 WP_010328256.1 TasA family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10872.77 Da        Isoelectric Point: 6.4730

>NTDB_id=268814 BV11031_RS05595 WP_010328246.1 1028797..1029093(+) (comGC) [Bacillus vallismortis strain DSM 11031]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMIKAQMTAFELDHEGQTPSLVDLQSEGYVKKDAV
CPNGKHIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=268814 BV11031_RS05595 WP_010328246.1 1028797..1029093(+) (comGC) [Bacillus vallismortis strain DSM 11031]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGCTAATTGTGCTCTTTATTATTTCAATCTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAGAAAAAAGGGTGCGAGGGCCTGCAAAATATGATTAAGGCGCAAATGACTG
CATTTGAGCTCGACCATGAAGGGCAAACTCCGAGCCTTGTTGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCAGTT
TGTCCAAATGGGAAACACATTATCATCACTGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

96.939

100

0.969
  comGC Staphylococcus aureus MW2

40.217

93.878

0.378
  comGC Staphylococcus aureus N315

40.217

93.878

0.378

Multiple sequence alignment