Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   BV11031_RS05585 Genome accession   NZ_CP026362
Coordinates   1026689..1027759 (+) Length   356 a.a.
NCBI ID   WP_010328244.1    Uniprot ID   -
Organism   Bacillus vallismortis strain DSM 11031     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1025040..1026392 1026689..1027759 flank 297


Gene organization within MGE regions


Location: 1025040..1027759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV11031_RS05575 (BV11031_05545) - 1025040..1026392 (-) 1353 WP_129550697.1 IS1182 family transposase -
  BV11031_RS05585 (BV11031_05555) comGA 1026689..1027759 (+) 1071 WP_010328244.1 competence protein ComGA Machinery gene

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40476.55 Da        Isoelectric Point: 8.4566

>NTDB_id=268812 BV11031_RS05585 WP_010328244.1 1026689..1027759(+) (comGA) [Bacillus vallismortis strain DSM 11031]
MDSIEMISRTLIEEAYSTKASDIHIVPRERDAVIHFRVDHALLKKRNMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLEEGHVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAVAAQRLVDLTCPFCENGCSSLYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHETD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=268812 BV11031_RS05585 WP_010328244.1 1026689..1027759(+) (comGA) [Bacillus vallismortis strain DSM 11031]
TTGGATTCAATAGAAATGATAAGCAGAACCTTAATTGAAGAGGCGTATTCAACAAAGGCTTCTGACATTCACATTGTGCC
GAGGGAGCGGGACGCCGTCATTCATTTCCGGGTAGATCATGCCTTGTTGAAAAAAAGGAACATGAAAAAAGAAGAGTGTG
TAAGACTGATTTCGCATTTTAAATTTCTCTCGGCGATGGACATAGGGGAAAGACGAAAACCGCAAAATGGTTCGCTGACG
TTAAAGCTAGAGGAGGGACATGTTCATTTAAGAATGTCGACACTCCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCTCAATACAATATCCCTTCGATCGATAAACTGTCATTATTTCCGAAGACGGGAGCCACTTTACTCTCATTTTTAA
AACATTCACACGGCATGCTCATTTTTACAGGGCCAACTGGTTCAGGGAAGACGACAACATTATACTCTCTCGTTCAATAT
GCAAAAAAACATTTTAATCGAAATATCGTCACACTGGAAGACCCTGTTGAAACAAGGGATGAGGATGTTCTGCAGGTGCA
GGTGAATGAAAAAGCGGGTGTGACATATTCGGCAGGTCTGAAGGCTATTTTGCGCCATGACCCGGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATCGCAGTACGGGCAGCGATGACGGGGCATTTGGTGCTGACGAGCCTTCAT
ACGAGAGATGCGAAGGGCGCGATTTACAGGCTGCTTGAATTCGGCATTAATATGAATGAAATCGAACAGACTGTCATTGC
GGTAGCGGCTCAGCGTTTGGTTGATTTAACTTGCCCGTTTTGTGAAAACGGATGTTCATCGTTGTATTGCCGCCAGTCAC
GAAACACCAGAAGAGCAAGCGTTTATGAACTGCTTTACGGAAAAAACCTTCAGCAATGCATTCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACACTGCGTCAAATTATTAGAAAAGGAATTGCACTCGGCTACTTGACCACAAATAACTA
TGACCGGTGGGTTTATCATGAAACAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

96.348

100

0.963

Multiple sequence alignment