Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AHA_RS21240 Genome accession   NC_008570
Coordinates   4657843..4659357 (+) Length   504 a.a.
NCBI ID   WP_011707862.1    Uniprot ID   A0KQS8
Organism   Aeromonas hydrophila subsp. hydrophila ATCC 7966     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4652843..4664357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHA_RS21225 (AHA_4203) - 4654608..4655552 (-) 945 WP_011707859.1 branched-chain amino acid transaminase -
  AHA_RS21230 ilvM 4655565..4655816 (-) 252 WP_005306810.1 acetolactate synthase 2 small subunit -
  AHA_RS21235 (AHA_4204) ilvG 4655813..4657459 (-) 1647 WP_011707860.1 acetolactate synthase 2 catalytic subunit -
  AHA_RS21240 (AHA_4206) comM 4657843..4659357 (+) 1515 WP_011707862.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AHA_RS21245 (AHA_4207) - 4659478..4660392 (+) 915 WP_011707863.1 acyltransferase -
  AHA_RS21250 (AHA_4209) - 4660386..4661342 (+) 957 WP_016352357.1 acyltransferase -
  AHA_RS21255 (AHA_4208) - 4661288..4661773 (-) 486 WP_011707865.1 DUF523 domain-containing protein -
  AHA_RS21260 (AHA_4210) - 4661871..4662521 (-) 651 WP_011707866.1 NrtR DNA-binding winged helix domain-containing protein -
  AHA_RS21265 (AHA_4211) - 4662597..4663232 (+) 636 WP_011707867.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54708.63 Da        Isoelectric Point: 7.4494

>NTDB_id=26836 AHA_RS21240 WP_011707862.1 4657843..4659357(+) (comM) [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
MSLAVVYSRASLGVAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQTTEALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRERVLGARERMLSRNGKLNNLLDSREIEEICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRQAI
EKEHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=26836 AHA_RS21240 WP_011707862.1 4657843..4659357(+) (comM) [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCTTGGGTGTCGCGGCCCCGCAAGTGACGGTGGAGGTGCACCTCTCCAA
CGGTTTGCCCGCCTTCAACATGGTGGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGTGCCCTGC
TCAACGGCAATTTCGAGTTCCCTTCCAAACACATCACGGTCAATCTGGCCCCAGCCGATCTGCCCAAGGAGGGGGGCCGC
TTCGATCTGGCCATCGCCATCGGCATCCTCGCCGCTTCCAAGCAGATACCCGCAAAATACCTGCTCGATCACGAATTTTT
AGGCGAACTGGCCCTGACCGGCGAGATCCGCCCCGTGCTCGGGGTACTGCCCGCCGTGCTCGCCTGCCGCGACGCGGGGC
GCACCCTGCTGGTACCGCGAGAAAACGGCCCCGAGGCCTCCCTCATTCAGGATGCCGAGGTGCGCACCGCCCATCAGCTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAGTACGAACTGCCACTGCCGGATCCCCAGACCACGGAGGCCCTGCCCGATGT
GCCGGACCTGCAGGACGTGATCGGCCAGTCTCAGGCCAAACGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCACCCGGCACCGGCAAGAGCATGCTGGCGAGCCGCTTGCCCGGCATTCTGCCACCACTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATTCACTCCATCGGCGGCCTCACCCCGCGCGCCGGTCACTGGCATCACAGACCCTATCG
CACGCCGCACCACAGCGCCTCGGCCGTGGCGCTGGTGGGAGGCGGCAGCCACCCACGGCCCGGTGAAATATCCCTGGCCC
ACAACGGCGTACTGTTTCTGGATGAGCTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGGCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCTTGCGGGCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGCAGCCTGACCGGCAAGGCTGAGCGGGGG
GAGTCGAGCCAGCAGATCCGCGAGCGGGTACTGGGGGCGCGGGAGCGCATGCTGAGCCGCAACGGCAAGCTCAACAACCT
GCTTGATAGCCGTGAAATCGAAGAAATTTGCCGCTTATCGCCGCAGGATGCCGAGTTTCTGGAGAATGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTGTCGCGCACCATAGCCGATCTGGCAGGACGACAGGCCATC
GAGAAGGAACACCTGATCGAGGCGCTCGGCTACCGGGCCATGGACCGGCTGCTGTCGCGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0KQS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Vibrio campbellii strain DS40M4

62.55

99.603

0.623
  comM Haemophilus influenzae Rd KW20

62.055

100

0.623
  comM Glaesserella parasuis strain SC1401

60.355

100

0.607
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.64

100

0.468

Multiple sequence alignment