Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | C1N50_RS01960 | Genome accession | NZ_CP026321 |
| Coordinates | 398400..398936 (+) | Length | 178 a.a. |
| NCBI ID | WP_005432828.1 | Uniprot ID | A0A812GP34 |
| Organism | Vibrio campbellii strain BoB-53 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 393400..403936
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1N50_RS01945 (C1N50_01945) | uvrA | 393464..396286 (-) | 2823 | WP_050905604.1 | excinuclease ABC subunit UvrA | - |
| C1N50_RS01950 (C1N50_01950) | galU | 396425..397297 (-) | 873 | WP_005432802.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| C1N50_RS01955 (C1N50_01955) | qstR | 397462..398106 (-) | 645 | WP_005432827.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| C1N50_RS01960 (C1N50_01960) | ssb | 398400..398936 (+) | 537 | WP_005432828.1 | single-stranded DNA-binding protein | Machinery gene |
| C1N50_RS01965 (C1N50_01965) | csrD | 399184..401193 (+) | 2010 | WP_005432793.1 | RNase E specificity factor CsrD | - |
| C1N50_RS01970 (C1N50_01970) | - | 401205..402653 (+) | 1449 | WP_038891136.1 | MSHA biogenesis protein MshI | - |
| C1N50_RS01975 (C1N50_01975) | gspM | 402650..403300 (+) | 651 | WP_038891137.1 | type II secretion system protein GspM | - |
| C1N50_RS01980 (C1N50_01980) | - | 403293..403622 (+) | 330 | WP_043883545.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 19774.84 Da Isoelectric Point: 4.9269
>NTDB_id=268117 C1N50_RS01960 WP_005432828.1 398400..398936(+) (ssb) [Vibrio campbellii strain BoB-53]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQ
PQQQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQ
PQQQYNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=268117 C1N50_RS01960 WP_005432828.1 398400..398936(+) (ssb) [Vibrio campbellii strain BoB-53]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTTGCTGAAGTAGCAGGCGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGACCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCACCAATGGGCGGTGGTCAGCCTCAACAGCAGCAAC
AAGGTGGTTGGGGTCAACCTCAACAACCAGCTCAGCAGCAATACAATGCTCCTCAGCAACAGCAACAGGCTCCGCAGCAA
CCTCAGCAGCAATACAACGAGCCACCAATGGATTTCGACGACGATATTCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTTGCTGAAGTAGCAGGCGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGACCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCACCAATGGGCGGTGGTCAGCCTCAACAGCAGCAAC
AAGGTGGTTGGGGTCAACCTCAACAACCAGCTCAGCAGCAATACAATGCTCCTCAGCAACAGCAACAGGCTCCGCAGCAA
CCTCAGCAGCAATACAACGAGCCACCAATGGATTTCGACGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
80.447 |
100 |
0.809 |
| ssb | Glaesserella parasuis strain SC1401 |
56.545 |
100 |
0.607 |
| ssb | Neisseria meningitidis MC58 |
48.333 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.333 |
100 |
0.489 |