Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   C1N50_RS01955 Genome accession   NZ_CP026321
Coordinates   397462..398106 (-) Length   214 a.a.
NCBI ID   WP_005432827.1    Uniprot ID   -
Organism   Vibrio campbellii strain BoB-53     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 392462..403106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N50_RS01945 (C1N50_01945) uvrA 393464..396286 (-) 2823 WP_050905604.1 excinuclease ABC subunit UvrA -
  C1N50_RS01950 (C1N50_01950) galU 396425..397297 (-) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  C1N50_RS01955 (C1N50_01955) qstR 397462..398106 (-) 645 WP_005432827.1 LuxR C-terminal-related transcriptional regulator Regulator
  C1N50_RS01960 (C1N50_01960) ssb 398400..398936 (+) 537 WP_005432828.1 single-stranded DNA-binding protein Machinery gene
  C1N50_RS01965 (C1N50_01965) csrD 399184..401193 (+) 2010 WP_005432793.1 RNase E specificity factor CsrD -
  C1N50_RS01970 (C1N50_01970) - 401205..402653 (+) 1449 WP_038891136.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24551.46 Da        Isoelectric Point: 8.0591

>NTDB_id=268116 C1N50_RS01955 WP_005432827.1 397462..398106(-) (qstR) [Vibrio campbellii strain BoB-53]
MKKSAYARKLFLISMEEDAGKKVEALEKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEESSLEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=268116 C1N50_RS01955 WP_005432827.1 397462..398106(-) (qstR) [Vibrio campbellii strain BoB-53]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGATGCAGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCGACCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATCGACTTCAGTGAGCACAAGGAGTTGGTTCTATCGATAAAAAACCTTCCCCTGATTTGGAAGAATTTCGAAACG
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTATTGGCGTTTGGTCAATTGAAAGGCATCTTCTATGAAGA
GAGTTCTCTTGAGCAGATTGGCGAAGGGCTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGTAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACCGCTCCTGCCACCGTCGATTTGACCATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATAAAGTC
TCACCTGTATCAGATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

100

100

1
  qstR Vibrio parahaemolyticus RIMD 2210633

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment