Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | C2U38_RS23840 | Genome accession | NZ_CP026235 |
| Coordinates | 4742593..4743120 (-) | Length | 175 a.a. |
| NCBI ID | WP_016155359.1 | Uniprot ID | A0AAE2J7N6 |
| Organism | Citrobacter freundii complex sp. CFNIH3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4737593..4748120
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2U38_RS23820 (C2U38_23815) | soxR | 4739236..4739694 (-) | 459 | WP_016155363.1 | redox-sensitive transcriptional activator SoxR | - |
| C2U38_RS23825 (C2U38_23820) | soxS | 4739781..4740104 (+) | 324 | WP_016155362.1 | superoxide response transcriptional regulator SoxS | - |
| C2U38_RS23830 (C2U38_23825) | - | 4740107..4741693 (-) | 1587 | WP_016155448.1 | EAL domain-containing protein | - |
| C2U38_RS23835 (C2U38_23830) | - | 4742245..4742526 (+) | 282 | WP_016155360.1 | YjcB family protein | - |
| C2U38_RS23840 (C2U38_23835) | ssb | 4742593..4743120 (-) | 528 | WP_016155359.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| C2U38_RS23850 (C2U38_23845) | uvrA | 4743372..4746194 (+) | 2823 | WP_016155358.1 | excinuclease ABC subunit UvrA | - |
| C2U38_RS23855 (C2U38_23850) | - | 4746289..4746645 (-) | 357 | WP_016155357.1 | MmcQ/YjbR family DNA-binding protein | - |
| C2U38_RS23860 (C2U38_23855) | aphA | 4746772..4747485 (-) | 714 | WP_003826615.1 | acid phosphatase AphA | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 18749.79 Da Isoelectric Point: 5.2456
>NTDB_id=267997 C2U38_RS23840 WP_016155359.1 4742593..4743120(-) (ssb) [Citrobacter freundii complex sp. CFNIH3]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAA
PSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAA
PSNEPPMDFDDDIPF
Nucleotide
Download Length: 528 bp
>NTDB_id=267997 C2U38_RS23840 WP_016155359.1 4742593..4743120(-) (ssb) [Citrobacter freundii complex sp. CFNIH3]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTGGTGCTGTTCGGCAAACTGGCGGAAGTTGCCAGCGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGTTGGGCGGTCGTCAGGGTGGTGGGGCTCCGGCAGGTGGCGGCCAGCAGCAGGGGGGTTGGGGTC
AGCCTCAGCAGCCGCAAGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCGGCTCCGGCAGCG
CCGTCTAATGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTGGTGCTGTTCGGCAAACTGGCGGAAGTTGCCAGCGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGTTGGGCGGTCGTCAGGGTGGTGGGGCTCCGGCAGGTGGCGGCCAGCAGCAGGGGGGTTGGGGTC
AGCCTCAGCAGCCGCAAGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCGGCTCCGGCAGCG
CCGTCTAATGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.586 |
100 |
0.771 |
| ssb | Glaesserella parasuis strain SC1401 |
57.609 |
100 |
0.606 |
| ssb | Neisseria meningitidis MC58 |
48.333 |
100 |
0.497 |
| ssb | Neisseria gonorrhoeae MS11 |
48.333 |
100 |
0.497 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.111 |
100 |
0.371 |