Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SFUM_RS08245 Genome accession   NC_008554
Coordinates   1943806..1944306 (-) Length   166 a.a.
NCBI ID   WP_041440172.1    Uniprot ID   -
Organism   Syntrophobacter fumaroxidans MPOB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1938806..1949306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SFUM_RS08225 (Sfum_1590) hemA 1939392..1940777 (+) 1386 WP_011698447.1 glutamyl-tRNA reductase -
  SFUM_RS08230 (Sfum_1591) - 1940762..1941166 (+) 405 WP_011698448.1 hypothetical protein -
  SFUM_RS08235 (Sfum_1592) tatA 1941183..1941377 (+) 195 WP_011698449.1 twin-arginine translocase TatA/TatE family subunit -
  SFUM_RS08240 (Sfum_1593) - 1941701..1942213 (-) 513 WP_041440170.1 hypothetical protein -
  SFUM_RS08245 (Sfum_1595) ssb 1943806..1944306 (-) 501 WP_041440172.1 single-stranded DNA-binding protein Machinery gene
  SFUM_RS08250 (Sfum_1596) - 1944877..1945611 (+) 735 WP_011698453.1 lysophospholipid acyltransferase family protein -
  SFUM_RS08255 (Sfum_1597) - 1945645..1947330 (+) 1686 WP_011698454.1 ribonuclease J -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17861.79 Da        Isoelectric Point: 6.4742

>NTDB_id=26742 SFUM_RS08245 WP_041440172.1 1943806..1944306(-) (ssb) [Syntrophobacter fumaroxidans MPOB]
MAKGTVNKVILVGRLGGDPDVRYTPNGMAIAKFNLATNERVPAGEGNWEDRTEWHRIVVFGKLAETCGNYLSKGRLVYIE
GSLRTQQWEDAQGVKRYTTEIVARDMTMLGGGAGEGQQSQGQYGQGQQAQGQSQGKPQSSQGATGRSRADELPPHPGGGP
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=26742 SFUM_RS08245 WP_041440172.1 1943806..1944306(-) (ssb) [Syntrophobacter fumaroxidans MPOB]
ATGGCAAAGGGAACGGTCAACAAGGTTATCCTGGTAGGCAGACTCGGAGGAGATCCCGATGTCCGGTATACTCCCAATGG
GATGGCGATCGCAAAGTTCAACCTGGCGACGAATGAACGAGTGCCCGCGGGCGAAGGAAACTGGGAAGACCGTACGGAAT
GGCACCGTATCGTGGTCTTCGGAAAACTCGCCGAGACATGCGGCAACTATCTCAGCAAGGGGCGCCTGGTGTATATCGAG
GGCAGCCTCCGAACGCAGCAATGGGAGGATGCCCAGGGAGTGAAACGCTACACCACGGAAATCGTCGCCCGTGATATGAC
GATGCTTGGCGGAGGAGCCGGAGAGGGGCAGCAGTCACAGGGACAGTACGGCCAGGGCCAGCAGGCGCAAGGCCAGAGCC
AGGGAAAACCTCAGTCGAGTCAGGGCGCAACGGGTCGTTCCCGCGCGGACGAGCTTCCGCCGCATCCCGGAGGGGGGCCG
GACGACGACATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.199

100

0.482
  ssb Glaesserella parasuis strain SC1401

40.541

100

0.452
  ssb Neisseria gonorrhoeae MS11

41.954

100

0.44
  ssb Neisseria meningitidis MC58

41.477

100

0.44

Multiple sequence alignment