Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   LCU_RS04690 Genome accession   NZ_CP026116
Coordinates   887676..887984 (-) Length   102 a.a.
NCBI ID   WP_004270901.1    Uniprot ID   A0AAJ0LFY3
Organism   Latilactobacillus curvatus JCM 1096 = DSM 20019     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 882676..892984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCU_RS04660 (LCU_04675) - 883346..883798 (-) 453 WP_056967146.1 hypothetical protein -
  LCU_RS04665 (LCU_04680) - 883858..885051 (-) 1194 WP_004270911.1 acetate kinase -
  LCU_RS04670 (LCU_04685) - 885073..886083 (-) 1011 WP_054644024.1 class I SAM-dependent methyltransferase -
  LCU_RS04675 (LCU_04690) - 886208..886531 (-) 324 WP_039099486.1 hypothetical protein -
  LCU_RS04680 (LCU_04695) - 886509..886889 (-) 381 WP_004270914.1 ComGF family competence protein -
  LCU_RS09955 - 886960..887265 (-) 306 WP_056965894.1 hypothetical protein -
  LCU_RS04685 (LCU_04700) - 887252..887644 (-) 393 WP_004270899.1 hypothetical protein -
  LCU_RS04690 (LCU_04705) comGC 887676..887984 (-) 309 WP_004270901.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LCU_RS04695 (LCU_04710) comGB 887981..888982 (-) 1002 WP_056965892.1 type II secretion system F family protein Machinery gene
  LCU_RS04700 (LCU_04715) comGA 888972..889847 (-) 876 WP_039099523.1 competence type IV pilus ATPase ComGA Machinery gene
  LCU_RS04705 (LCU_04720) - 889951..890682 (-) 732 WP_004270897.1 YebC/PmpR family DNA-binding transcriptional regulator -
  LCU_RS04710 (LCU_04725) - 890772..891272 (-) 501 WP_056965890.1 VanZ family protein -
  LCU_RS04715 (LCU_04730) - 891375..891752 (+) 378 WP_056965888.1 hypothetical protein -
  LCU_RS04725 (LCU_04740) - 891933..892268 (-) 336 WP_056965886.1 hypothetical protein -
  LCU_RS04730 (LCU_04745) - 892463..892702 (+) 240 WP_004270892.1 cytochrome b5 domain-containing protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11238.13 Da        Isoelectric Point: 9.6264

>NTDB_id=267244 LCU_RS04690 WP_004270901.1 887676..887984(-) (comGC) [Latilactobacillus curvatus JCM 1096 = DSM 20019]
MKKKRNAFTLIEMVVVLAVIAMLVLLIAPNLMHQKETAEQKTDTALVATIQTQVELAEDDGKTVSSLADLASGEKYLTNN
QVKQAEKRGITIKDNKVVQNTK

Nucleotide


Download         Length: 309 bp        

>NTDB_id=267244 LCU_RS04690 WP_004270901.1 887676..887984(-) (comGC) [Latilactobacillus curvatus JCM 1096 = DSM 20019]
ATGAAGAAGAAAAGAAATGCATTTACATTGATCGAAATGGTCGTTGTGCTAGCTGTGATAGCAATGTTAGTCTTGTTAAT
TGCACCTAATTTAATGCATCAGAAAGAGACAGCTGAGCAAAAAACGGATACGGCTCTAGTGGCAACGATTCAAACACAAG
TTGAATTAGCTGAGGATGACGGTAAAACGGTGTCGAGTCTAGCCGATTTAGCATCAGGTGAAAAATATTTAACCAATAAT
CAGGTTAAACAAGCTGAAAAACGCGGCATAACAATTAAGGATAATAAAGTTGTTCAAAATACAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Latilactobacillus sakei subsp. sakei 23K

60

98.039

0.588

Multiple sequence alignment