Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C2H86_RS12770 Genome accession   NZ_CP026115
Coordinates   2829756..2831246 (-) Length   496 a.a.
NCBI ID   WP_159412795.1    Uniprot ID   A0A6I6Y6Y2
Organism   Pseudomonas putida strain W5     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2824756..2836246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H86_RS12755 (C2H86_27445) - 2827879..2828859 (+) 981 WP_159412793.1 response regulator -
  C2H86_RS12760 (C2H86_27450) - 2828856..2829221 (+) 366 WP_205524605.1 response regulator -
  C2H86_RS12765 (C2H86_27455) - 2829295..2829723 (+) 429 WP_159412794.1 DoxX family protein -
  C2H86_RS12770 (C2H86_27460) comM 2829756..2831246 (-) 1491 WP_159412795.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C2H86_RS12775 (C2H86_27465) - 2831502..2833514 (+) 2013 WP_159412796.1 DUF4034 domain-containing protein -
  C2H86_RS12780 (C2H86_27470) - 2833706..2833969 (-) 264 WP_103448521.1 accessory factor UbiK family protein -
  C2H86_RS12785 (C2H86_27475) glnK 2834346..2834684 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  C2H86_RS12790 (C2H86_27480) - 2834732..2836066 (+) 1335 WP_159412797.1 ammonium transporter -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52827.55 Da        Isoelectric Point: 7.9482

>NTDB_id=267218 C2H86_RS12770 WP_159412795.1 2829756..2831246(-) (comM) [Pseudomonas putida strain W5]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPLPALAEMECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAAGHL
LELVAHLNGQVPLPPFAANGLVLKQQPYPDLSEVQGQVAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIQSVSGHTPLSSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARETTTLNNQPSG
ETSADVAVKVAQAREVQQRRQGCANAFLNLEGLRSHCQLATADQAWLESACERLTLSLRAAHRLLKVARTLADLEGSQAI
SRGHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=267218 C2H86_RS12770 WP_159412795.1 2829756..2831246(-) (comM) [Pseudomonas putida strain W5]
ATGTCCCTCGCCCTCGTTCACAGCCGCGCCCAGGTCGGCGTGCAGGCCCCGGCGGTCAGCGTCGAAACGCACCTGGCCAA
CGGCCTGCCTCATCTCACCTTGGTCGGCCTGCCGGAAACCACGGTCAAGGAGAGCAAGGACCGTGTGCGCAGCGCCATCG
TCAATTCCGGACTGAATTACCCGCAGCGGCGCATTACCCAGAACCTCGCGCCGGCCGACCTGCCCAAGGACGGCGGGCGT
TATGACCTGGCCATCGCCTTGGGCATACTCGCCGCCGATGGCCAGGTACCGTTGCCAGCCCTGGCTGAAATGGAATGCCT
GGGCGAGCTGGCCCTGTCGGGCAAGTTGCGCCCAGTGCAGGGCGTGTTGCCGGCGGCGCTGGCGGCGCGCGAGGCCGGCC
GGGCATTGGTGGTGCCGCGGGAGAATGCTGAAGAAGCCAGCCTGGCGGGCGGGCTGGTGGTGTATGCAGCTGGGCACCTG
CTGGAGTTGGTGGCGCATCTCAACGGGCAGGTGCCGCTACCACCATTTGCTGCCAATGGCTTGGTCCTGAAGCAACAGCC
TTATCCGGACCTCAGCGAGGTACAAGGCCAGGTCGCGGCCAAGCGGGCATTGCTGTTGGCCGCTGCCGGAGCGCATAACC
TGCTGTTCACCGGGCCGCCCGGCACGGGCAAGACGCTACTCGCCAGCCGCCTGCCCGGCCTGCTGCCACCTCTGGATGAG
CAAGAGGCGCTGGAAGTGGCGGCGATCCAGTCGGTGAGTGGCCACACGCCGCTGAGCAGCTGGCCGCAGCGCCCATTTCG
CCACCCGCACCATTCGGCCTCGGGGCCGGCGCTGGTAGGCGGCAGCAGCCGGCCGCAGCCAGGCGAGATCACCCTGGCGC
ACCATGGTGTGCTGTTTCTCGACGAGCTGCCAGAGTTTGAAAGGCGCGTGCTGGAAGTGCTGCGCGAGCCGCTGGAGTCG
GGCGAGATCGTGATTGCGCGGGCGCGCGACAAGGTGCGTTTCCCGGCGCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACCGGCCGCTGCCGCTGCAGCACCGAGCAGATAGCACGGTATCGCAACAAGCTGT
CTGGCCCATTGCTGGACCGCATCGACCTGCACCTGACCGTGGCCCGCGAGACCACCACGCTCAACAACCAGCCCAGTGGG
GAGACCAGCGCCGATGTGGCTGTGAAGGTGGCGCAGGCTCGGGAGGTGCAGCAGCGGCGGCAAGGCTGTGCCAATGCGTT
TCTGAACCTCGAGGGATTGCGCAGCCATTGTCAGCTGGCAACGGCGGACCAGGCTTGGCTGGAAAGTGCCTGCGAGCGGC
TGACGCTTTCATTGCGGGCGGCGCATCGGTTGTTGAAAGTGGCGCGGACCTTGGCAGATCTGGAAGGTAGCCAGGCGATC
AGCCGGGGGCATCTGGCCGAGGCTTTACAGTACCGACCGGGCAGCAGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I6Y6Y2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.8

100

0.563
  comM Vibrio cholerae strain A1552

55.758

99.798

0.556
  comM Vibrio campbellii strain DS40M4

55.758

99.798

0.556
  comM Glaesserella parasuis strain SC1401

53.386

100

0.54
  comM Legionella pneumophila str. Paris

50

100

0.5
  comM Legionella pneumophila strain ERS1305867

50

100

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.813

100

0.474

Multiple sequence alignment