Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C1707_RS20240 Genome accession   NZ_CP026100
Coordinates   4453839..4454372 (-) Length   177 a.a.
NCBI ID   WP_101715735.1    Uniprot ID   A0A2N5CLE7
Organism   Caulobacter flavus strain RHGG3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4448839..4459372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1707_RS20225 (C1707_20205) bioD 4449552..4450214 (+) 663 WP_101715733.1 dethiobiotin synthase -
  C1707_RS20230 (C1707_20210) - 4450218..4451105 (+) 888 WP_101715734.1 Gfo/Idh/MocA family protein -
  C1707_RS20235 (C1707_20215) - 4451102..4453420 (-) 2319 WP_420808284.1 TonB-dependent receptor domain-containing protein -
  C1707_RS20240 (C1707_20220) ssb 4453839..4454372 (-) 534 WP_101715735.1 single-stranded DNA-binding protein Machinery gene
  C1707_RS20245 (C1707_20225) - 4454554..4454943 (-) 390 WP_101715736.1 hypothetical protein -
  C1707_RS20250 (C1707_20230) - 4455024..4455704 (-) 681 WP_101715737.1 hypothetical protein -
  C1707_RS20255 (C1707_20235) - 4455771..4458605 (-) 2835 WP_101715768.1 hypothetical protein -
  C1707_RS20260 (C1707_20240) pseH 4458696..4459250 (-) 555 WP_101715738.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18736.51 Da        Isoelectric Point: 5.3338

>NTDB_id=267156 C1707_RS20240 WP_101715735.1 4453839..4454372(-) (ssb) [Caulobacter flavus strain RHGG3]
MAGSVNKVILVGNLGADPEIRTLNSGDRVANLRIATSETWRDRSSGERKEKTEWHRVVIFNDNLVKVAESYLRKGSTVYI
EGAIQTRKWTDQQGQEKYSTEIVLQKFRGELTMLGGRGDGAGASSGGGGYDDGYGQGGGGGYGGGQGGGNFGGGAPRSQP
SGPRESFSADLDDEIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=267156 C1707_RS20240 WP_101715735.1 4453839..4454372(-) (ssb) [Caulobacter flavus strain RHGG3]
ATGGCTGGCAGCGTCAACAAGGTCATCCTCGTCGGCAACCTCGGGGCCGACCCCGAAATTCGCACCCTCAACTCGGGCGA
CCGCGTCGCCAACCTGCGCATCGCCACGTCCGAAACCTGGCGCGACCGTTCCAGCGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGGGTCGTGATCTTCAACGACAACCTGGTGAAGGTGGCCGAGAGCTACCTGCGCAAGGGCTCGACCGTCTACATC
GAGGGCGCCATCCAGACCCGCAAGTGGACCGACCAGCAGGGGCAGGAAAAGTACTCGACCGAGATCGTGCTGCAGAAGTT
CCGCGGCGAACTGACCATGCTGGGCGGCCGCGGCGACGGCGCCGGCGCCTCGTCGGGCGGCGGCGGCTATGACGACGGCT
ACGGCCAGGGCGGCGGTGGCGGCTACGGCGGCGGCCAGGGCGGCGGCAACTTCGGCGGCGGCGCTCCGCGCAGCCAGCCC
AGCGGCCCGCGCGAGAGCTTCTCGGCCGACCTGGACGACGAAATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N5CLE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.277

100

0.492
  ssb Vibrio cholerae strain A1552

49.711

97.74

0.486
  ssb Neisseria gonorrhoeae MS11

41.848

100

0.435
  ssb Neisseria meningitidis MC58

40.984

100

0.424

Multiple sequence alignment