Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | RK93_RS11925 | Genome accession | NZ_CP026072 |
| Coordinates | 2302949..2303344 (+) | Length | 131 a.a. |
| NCBI ID | WP_000932694.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain FDAARGOS_35 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2297949..2308344
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RK93_RS11895 (RK93_011895) | - | 2299208..2299612 (+) | 405 | WP_001094394.1 | F0F1 ATP synthase subunit epsilon | - |
| RK93_RS11900 (RK93_011900) | - | 2299950..2300042 (+) | 93 | WP_001790611.1 | hypothetical protein | - |
| RK93_RS11905 (RK93_011905) | - | 2300174..2300407 (+) | 234 | WP_000384523.1 | DUF1146 family protein | - |
| RK93_RS11910 (RK93_011910) | murA | 2300518..2301783 (+) | 1266 | WP_000358000.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| RK93_RS11915 (RK93_011915) | fabZ | 2301817..2302257 (+) | 441 | WP_000447678.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| RK93_RS11920 (RK93_011920) | - | 2302315..2302755 (-) | 441 | WP_000846746.1 | YwpF-like family protein | - |
| RK93_RS11925 (RK93_011925) | ssb | 2302949..2303344 (+) | 396 | WP_000932694.1 | single-stranded DNA-binding protein | Machinery gene |
| RK93_RS11930 (RK93_011930) | sceD | 2303733..2304428 (+) | 696 | WP_000752008.1 | lytic transglycosylase SceD | - |
| RK93_RS11935 (RK93_011935) | tenA | 2304814..2305503 (+) | 690 | WP_000396075.1 | thiaminase II | - |
| RK93_RS11940 (RK93_011940) | thiD | 2305496..2306326 (+) | 831 | WP_000594959.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| RK93_RS11945 (RK93_011945) | thiM | 2306310..2307101 (+) | 792 | WP_001108476.1 | hydroxyethylthiazole kinase | - |
| RK93_RS11950 (RK93_011950) | thiE | 2307103..2307744 (+) | 642 | WP_000483153.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 15042.09 Da Isoelectric Point: 5.6824
>NTDB_id=266604 RK93_RS11925 WP_000932694.1 2302949..2303344(+) (ssb) [Staphylococcus aureus strain FDAARGOS_35]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI
Nucleotide
Download Length: 396 bp
>NTDB_id=266604 RK93_RS11925 WP_000932694.1 2302949..2303344(+) (ssb) [Staphylococcus aureus strain FDAARGOS_35]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
100 |
100 |
1 |
| ssb | Staphylococcus aureus MW2 |
99.237 |
100 |
0.992 |