Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MC60_RS14015 Genome accession   NZ_CP026055
Coordinates   3090537..3092054 (-) Length   505 a.a.
NCBI ID   WP_042864743.1    Uniprot ID   -
Organism   Aeromonas caviae strain FDAARGOS_72     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3085537..3097054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MC60_RS13990 (MC60_013990) - 3086673..3087308 (-) 636 WP_042864741.1 nicotinamidase -
  MC60_RS13995 (MC60_013995) - 3087383..3088033 (+) 651 WP_042864742.1 NUDIX hydrolase -
  MC60_RS14000 (MC60_014000) - 3088110..3088595 (+) 486 WP_103255145.1 DUF523 domain-containing protein -
  MC60_RS14005 (MC60_014005) - 3088541..3089497 (-) 957 WP_103255146.1 acyltransferase -
  MC60_RS14010 (MC60_014010) - 3089505..3090404 (-) 900 WP_103255147.1 acyltransferase -
  MC60_RS14015 (MC60_014015) comM 3090537..3092054 (-) 1518 WP_042864743.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MC60_RS14025 (MC60_014025) ilvG 3092439..3094085 (+) 1647 WP_103255148.1 acetolactate synthase 2 catalytic subunit -
  MC60_RS14030 (MC60_014030) ilvM 3094082..3094339 (+) 258 WP_010676086.1 acetolactate synthase 2 small subunit -
  MC60_RS14035 (MC60_014035) - 3094352..3095296 (+) 945 WP_039039680.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54747.76 Da        Isoelectric Point: 7.7038

>NTDB_id=266175 MC60_RS14015 WP_042864743.1 3090537..3092054(-) (comM) [Aeromonas caviae strain FDAARGOS_72]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPAKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPSVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQSAETLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGTHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPRGSLTGKAERG
ESSQQIRERVLGVRERMLSRSGKLNNLLDSREIEYVCRLSPQDAEFLEGAIQKLGLSIRAWHRILRVSRTIADLAGHVTI
ERAHLIEALGYRAMDRLLSRLRGGP

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=266175 MC60_RS14015 WP_042864743.1 3090537..3092054(-) (comM) [Aeromonas caviae strain FDAARGOS_72]
ATGTCATTAGCTGTTGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTGGAAGTGCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTGGGGTTGCCGGAAACCTCGGTGAAAGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAATTTCCGGCCAAGCACATCACGGTCAACCTGGCCCCTGCGGATCTGCCCAAAGAGGGGGGCCGC
TTCGACCTGGCCATCGCCATCGGCATTCTCGCCGCATCCAAGCAGATACCCGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAATTGGCCCTGACGGGCGAGATCCGCCCCGTGCTTGGGGTGCTCCCCTCGGTGCTCGCCTGCCGCGACGCAGGGC
GCACCCTGCTGGTCCCACGGGAGAACGGTCCGGAGGCTTCCCTCATACAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCGGTCACCGCCTGGCTGGCGGGCCAGTACGAACTACCGCTGCCGGAACCCCAGAGCGCGGAGACCCTGCCCGACGT
GCCGGATCTACAGGACGTGATCGGTCAGTCCCAGGCGAAGCGGGCGCTGGAGATCGCCGCAGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCCCCCGGCACCGGCAAGAGCATGTTGGCCAGCCGTCTGCCCGGAATTCTGCCGCCGCTCAGCGAACAA
GAAGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCCCGCGCCGGCCACTGGCACCACAGGCCGTATCG
CACGCCCCATCATAGCGCCTCGGCGGTGGCGCTGGTGGGCGGGGGTACCCATCCCAGGCCTGGCGAAATTTCCCTCGCCC
ACAACGGGGTCCTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTTCGCGAGCCGCTGGAAACC
GGGCACATTACCATCAGTCGTGCCGCCCGCCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGTGCCATGAATCCCAG
CCCCTGCGGCCATTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTATCTGGGCAAGCTCTCCGGCC
CCTTTCTCGATCGGTTCGATCTGACGGTAGAGGTCCCGCTCTTGCCCAGGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAATCGAGCCAGCAGATACGCGAACGGGTGCTGGGGGTGCGAGAGCGCATGCTGAGTCGCAGCGGAAAACTCAACAACCT
GCTGGATAGTCGTGAAATCGAATATGTTTGCAGATTATCGCCACAGGATGCCGAGTTTCTGGAAGGTGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATCGCCGATCTGGCGGGACACGTCACCATC
GAGAGAGCGCATCTGATCGAAGCCCTTGGCTATCGTGCCATGGACAGGCTGTTGTCACGGCTGCGCGGGGGCCCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.546

99.406

0.632
  comM Haemophilus influenzae Rd KW20

62.055

100

0.622
  comM Vibrio campbellii strain DS40M4

61.952

99.406

0.616
  comM Glaesserella parasuis strain SC1401

60.433

100

0.608
  comM Legionella pneumophila str. Paris

50.992

99.802

0.509
  comM Legionella pneumophila strain ERS1305867

50.992

99.802

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.776

100

0.461

Multiple sequence alignment