Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MC51_RS16675 Genome accession   NZ_CP026050
Coordinates   3539615..3540145 (+) Length   176 a.a.
NCBI ID   WP_046897200.1    Uniprot ID   -
Organism   Serratia marcescens strain FDAARGOS_65     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3534615..3545145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MC51_RS16655 (MC51_016655) maa 3534639..3535196 (+) 558 WP_041036886.1 maltose O-acetyltransferase -
  MC51_RS16660 (MC51_016660) - 3535227..3536279 (-) 1053 WP_047570363.1 NAD(P)-dependent alcohol dehydrogenase -
  MC51_RS16665 (MC51_016665) uvrA 3536509..3539337 (-) 2829 WP_033636192.1 excinuclease ABC subunit UvrA -
  MC51_RS16675 (MC51_016675) ssb 3539615..3540145 (+) 531 WP_046897200.1 single-stranded DNA-binding protein SSB1 Machinery gene
  MC51_RS16680 (MC51_016680) - 3540209..3540958 (-) 750 WP_033649717.1 3-oxoacyl-ACP reductase family protein -
  MC51_RS16685 (MC51_016685) - 3541108..3541368 (-) 261 WP_033636189.1 YdgH/BhsA/McbA-like domain containing protein -
  MC51_RS16690 (MC51_016690) - 3541565..3542008 (+) 444 WP_047570370.1 lipocalin-like domain-containing protein -
  MC51_RS16695 (MC51_016695) - 3542005..3542673 (+) 669 WP_039569625.1 glutathione S-transferase family protein -
  MC51_RS16700 (MC51_016700) - 3542721..3543128 (+) 408 WP_047570372.1 VOC family protein -
  MC51_RS16705 (MC51_016705) - 3543461..3544822 (+) 1362 WP_033636185.1 NCS2 family permease -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18778.68 Da        Isoelectric Point: 5.2358

>NTDB_id=266110 MC51_RS16675 WP_046897200.1 3539615..3540145(+) (ssb) [Serratia marcescens strain FDAARGOS_65]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
AASNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=266110 MC51_RS16675 WP_046897200.1 3539615..3540145(+) (ssb) [Serratia marcescens strain FDAARGOS_65]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCGCGCCCGGCGCAGAACAGCGCTCCG
GCGGCCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.677

100

0.631
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.723

100

0.369

Multiple sequence alignment