Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   DXX82_RS02240 Genome accession   NZ_CP031477
Coordinates   477458..478465 (-) Length   335 a.a.
NCBI ID   WP_115911224.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M27794     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 472458..483465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX82_RS02210 ybgC 473018..473446 (-) 429 WP_005696676.1 tol-pal system-associated acyl-CoA thioesterase -
  DXX82_RS02215 ybgE 473518..473805 (-) 288 WP_115912910.1 cyd operon protein YbgE -
  DXX82_RS02220 - 473808..473906 (-) 99 WP_111406655.1 cytochrome bd oxidase small subunit, CydX/CbdX family -
  DXX82_RS02225 cydB 473918..475057 (-) 1140 WP_111328417.1 cytochrome d ubiquinol oxidase subunit II -
  DXX82_RS02230 - 475072..476637 (-) 1566 WP_115911220.1 cytochrome ubiquinol oxidase subunit I -
  DXX82_RS02235 - 477091..477402 (+) 312 WP_115911222.1 DUF5339 domain-containing protein -
  DXX82_RS02240 ruvB 477458..478465 (-) 1008 WP_115911224.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  DXX82_RS02245 ruvA 478479..479090 (-) 612 WP_049380421.1 Holliday junction branch migration protein RuvA Machinery gene
  DXX82_RS02250 ruvC 479150..479722 (-) 573 WP_115911226.1 crossover junction endodeoxyribonuclease RuvC -
  DXX82_RS02255 - 479774..480208 (-) 435 WP_005697082.1 hypothetical protein -
  DXX82_RS02260 - 480226..480966 (-) 741 WP_115911228.1 YebC/PmpR family DNA-binding transcriptional regulator -
  DXX82_RS02265 nudB 481014..481472 (-) 459 WP_115911230.1 dihydroneopterin triphosphate diphosphatase -
  DXX82_RS02270 - 481580..482872 (-) 1293 WP_115911232.1 NRAMP family divalent metal transporter -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37183.62 Da        Isoelectric Point: 4.7914

>NTDB_id=265931 DXX82_RS02240 WP_115911224.1 477458..478465(-) (ruvB) [Haemophilus parainfluenzae strain M27794]
MIEADRIISSQVKMDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVTRSASCLNLELEDKAAFEVARRSRGTPRIANRLLRRVRDFADVRNDG
IISASIAKQALSMLDVDDAGFDYLDRKLLTTVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSLTYRHFGLQKPSE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=265931 DXX82_RS02240 WP_115911224.1 477458..478465(-) (ruvB) [Haemophilus parainfluenzae strain M27794]
ATGATCGAAGCAGATAGAATTATTAGCAGTCAGGTAAAGATGGATGAAGATGTCATCGATCGTGCGATTCGTCCAAAGCT
TTTAGCGGACTATGTGGGACAACCACAAGTGCGAGAGCAGATGGATATTTTTATTAAAGCCGCGAAATTGCGTCAAGATG
CCTTAGATCATCTTTTGATTTTTGGTCCCCCAGGATTAGGAAAAACAACTTTAGCTAATATTGTCGCAAATGAAATGGGC
GTGAATATCCGTACCACATCCGGCCCAGTACTTGAGAAAGCCGGGGATTTAGCGGCAATGCTGACAAATCTAGAACCACA
TGATGTGCTGTTTATTGATGAAATTCATCGTCTTTCACCAGCGATTGAAGAAGTACTTTACCCCGCAATGGAAGATTATC
AGCTAGATATTATGATTGGTGAAGGCCCTGCTGCGCGTTCAATTAAATTAGATTTGCCACCTTTTACATTAATTGGTGCT
ACAACCAGAGCAGGTTCGTTAACTTCACCATTGCGTGATCGTTTCGGAATCGTTCAACGTTTAGAATTTTATTCCGTTGA
AGATTTAACTTCTATTGTGACAAGAAGTGCCTCTTGCTTAAATCTAGAATTAGAAGATAAAGCCGCTTTTGAAGTGGCAC
GCCGCTCACGTGGTACGCCCCGTATTGCAAACCGTTTATTACGTCGAGTGCGAGATTTTGCGGATGTGCGCAATGATGGC
ATTATTTCAGCAAGCATTGCAAAACAAGCACTTTCAATGTTGGATGTCGATGATGCAGGCTTTGATTACTTAGACCGAAA
ATTGCTCACGACAGTGATAGAACGTTTTGATGGTGGCCCAGTTGGATTAGATAACTTAGCCGCAGCAATAGGTGAAGAGC
GAGACACTATCGAAGATGTGCTAGAACCTTATTTGATTCAACAAGGCTTTTTACAGCGTACGCCTCGAGGGCGAATTGCG
ACTTCGTTAACTTATCGACACTTCGGACTTCAGAAGCCATCAGAATAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.918

98.209

0.618
  ruvB Streptococcus pneumoniae TIGR4

58.896

97.313

0.573
  ruvB Streptococcus pneumoniae R6

58.896

97.313

0.573
  ruvB Streptococcus pneumoniae D39

58.896

97.313

0.573
  ruvB Synechocystis sp. PCC 6803

52.096

99.701

0.519
  ruvB Helicobacter pylori 26695

55.921

90.746

0.507